GWAS1441002_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1441002_H (glucose measurement QTL GWAS1441002 (human)) Homo sapiens

Symbol: GWAS1441002_H
Name: glucose measurement QTL GWAS1441002 (human)
RGD ID: 597344928
Trait: glucose measurement
Measurement Type: blood glucose level   (CMO:0000046)    
LOD Score: Not Available
P Value: 4.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3813,190,822 - 3,190,823RGD_MAPPER_PIPELINEGRCh38
GRCh3713,107,386 - 3,107,387RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1441002_HHumanblood glucose level  IAGPrs12139196405850206 GWAS_CATALOGPMID:37679419

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1441002_HHumanglucose measurement  IAGPrs12139196405850206 GWAS_CATALOGPMID:37679419

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353101PRDM16PR/SET domain 16130692033438621Human
38605325LOC107984909uncharacterized LOC107984909131875583195526Human


Peak: (rs12139196)
Human AssemblyChrPosition (strand)Source
GRCh3813,190,822 - 3,190,823RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597284121GWAS1380195_Hglucose measurement QTL GWAS1380195 (human)2e-09glucose measurementblood glucose level (CMO:0000046)131908223190823Human
597343566GWAS1439640_Hglucose measurement QTL GWAS1439640 (human)8e-10glucose measurementblood glucose level (CMO:0000046)131908223190823Human
597344928GWAS1441002_Hglucose measurement QTL GWAS1441002 (human)4e-10glucose measurementblood glucose level (CMO:0000046)131908223190823Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1441002_H GCST90271557 Random glucose levels 458,862 European ancestry individuals T 0.17 4E-10 9.398 rs12139196 0.0024 glucose measurement (EFO:0004468)
 PMID:37679419
GWAS1380195_H GCST90018955 Glucose levels 314,916 European ancestry individuals, 133,336 East Asian ancestry individuals T NR 2E-9 8.699 rs12139196 0.015 glucose measurement (EFO:0004468)
 PMID:34594039
GWAS1439640_H GCST90271558 Random glucose levels 7,644 African ancestry individuals, 1,503 Chinese ancestry individuals, 7,407 Indian, Pakistani ancestry individuals, 458,862 European ancestry individuals T 0.1819 8E-10 9.097 rs12139196 0.002358478 glucose measurement (EFO:0004468)
 PMID:37679419
Database
Acc Id
Source(s)
GWAS Catalog GCST90271557 GWAS Catalog

Note Type Note Reference