rs12139196 Rat Genome Database

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Variant: rs12139196 -  Homo sapiens

RGD ID: 155852561
RS ID: rs12139196
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC107984909  PRDM16  
Reference Nucleotide: G
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh38 1 3,190,822
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs12139196Humanblood glucose level  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:37679419

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
rs12139196Humanglucose measurement  IAGP 405850206 GWAS_CATALOGPMID:37679419
Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1380195_H GCST90018955 Glucose levels 314,916 European ancestry individuals, 133,336 East Asian ancestry individuals T NR 2E-9 8.699 rs12139196 0.015 glucose measurement (EFO:0004468)
 PMID:34594039
GWAS1439640_H GCST90271558 Random glucose levels 7,644 African ancestry individuals, 1,503 Chinese ancestry individuals, 7,407 Indian, Pakistani ancestry individuals, 458,862 European ancestry individuals T 0.1819 8E-10 9.097 rs12139196 0.002358478 glucose measurement (EFO:0004468)
 PMID:37679419
GWAS1441002_H GCST90271557 Random glucose levels 458,862 European ancestry individuals T 0.17 4E-10 9.398 rs12139196 0.0024 glucose measurement (EFO:0004468)
 PMID:37679419

Gene Symbol:LOC107984909
Accession:XR_001737869
Location:EXON;NON-CODING

Gene Symbol:PRDM16
Accession:NM_022114
Location:INTRON

Gene Symbol:PRDM16
Accession:NM_199454
Location:INTRON

.


Database
Acc Id
Source(s)
GWAS Catalog GCST90018955 GWAS Catalog