GWAS1347877_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1347877_H (dementia QTL GWAS1347877 (human)) Homo sapiens

Symbol: GWAS1347877_H
Name: dementia QTL GWAS1347877 (human)
RGD ID: 597251803
Trait: dementia
LOD Score: Not Available
P Value: 9.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,667,074 - 58,667,075RGD_MAPPER_PIPELINEGRCh38
GRCh371558,959,273 - 58,959,274RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1347877_HHumandementia  IAGPrs1427281405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:39046104


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735847ADAM10ADAM metallopeptidase domain 10155858880958749707Human


Peak: (rs1427281)
Human AssemblyChrPosition (strand)Source
GRCh381558,667,074 - 58,667,075RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596950182GWAS1069701_Hdementia QTL GWAS1069701 (human)0.0000009dementia155866707458667075Human
597251803GWAS1347877_Hdementia QTL GWAS1347877 (human)0.0000009dementia155866707458667075Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1347877_H GCST90449022 Dementia 2,263 African ancestry cases, 7,315 African ancestry controls, 502 Asian ancestry cases, 2,758 Asian ancestry controls, 44,009 European ancestry cases, 466,606 European ancestry controls, 128 Hispanic cases, 1,271 Hispanic controls T 0.4724 9E-7 6.046 rs1427281 0.0475757 PMID:39046104
Database
Acc Id
Source(s)
GWAS Catalog GCST90449022 GWAS Catalog

Note Type Note Reference