GWAS1342397_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1342397_H (alkaline phosphatase measurement QTL GWAS1342397 (human)) Homo sapiens

Symbol: GWAS1342397_H
Name: alkaline phosphatase measurement QTL GWAS1342397 (human)
RGD ID: 597246323
Trait: alkaline phosphatase measurement
Measurement Type: blood alkaline phosphatase activity level   (CMO:0000576)    
LOD Score: Not Available
P Value: 1.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,528,519 - 43,528,520RGD_MAPPER_PIPELINEGRCh38
GRCh371543,820,717 - 43,820,718RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1342397_HHumanblood alkaline phosphatase activity level  IAGPrs55707100405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1342397_HHumanalkaline phosphatase measurement  IAGPrs55707100405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736437MAP1Amicrotubule associated protein 1A154351095443531611Human


Peak: (rs55707100)
Human AssemblyChrPosition (strand)Source
GRCh381543,528,519 - 43,528,520RGD_MAPPER_PIPELINE


1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597220957GWAS1317031_Hapolipoprotein A 1 measurement QTL GWAS1317031 (human)3e-26apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)154352851943528520Human
597578456GWAS1635316_Hhigh density lipoprotein cholesterol measurement QTL GWAS1635316 (human)1e-37high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
597254480GWAS1350554_HC-reactive protein measurement QTL GWAS1350554 (human)3e-25C-reactive protein measurementblood C-reactive protein level (CMO:0003160)154352851943528520Human
597066522GWAS1162596_Htriglyceride measurement QTL GWAS1162596 (human)0.000003triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
597024665GWAS1120739_Hhigh density lipoprotein cholesterol measurement QTL GWAS1120739 (human)1e-18high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
597255445GWAS1351519_Hcalcium measurement QTL GWAS1351519 (human)7e-34calcium measurementblood calcium level (CMO:0000502)154352851943528520Human
597066523GWAS1162597_Htriglyceride measurement QTL GWAS1162597 (human)1e-41triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human
597244823GWAS1340897_Hhigh density lipoprotein cholesterol measurement QTL GWAS1340897 (human)3e-36high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
597585872GWAS1642732_Hhigh density lipoprotein cholesterol measurement QTL GWAS1642732 (human)3e-41high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154352851943528520Human
597066521GWAS1162595_Htriglyceride measurement QTL GWAS1162595 (human)1e-35triglyceride measurementblood triglyceride level (CMO:0000118)154352851943528520Human

1 to 10 of 48 rows


1 to 20 of 50 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1342397_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals T NR 1E-20 20 rs55707100 0.0721 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS1635316_H GCST90479633 high density lipoprotein cholesterol (HDLC, minimm, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 1E-37 37 rs55707100 0.149 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
None Available GCST90479631 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 1E-37 37 rs55707100 0.1477 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1120739_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-18 18 rs55707100 0.096 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS1120740_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 2E-22 21.699 rs55707100 0.102 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS564866_H GCST008702 Triglyceride levels up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals T 0.0328 7E-10 9.155 rs55707100 0.0506 triglyceride measurement (EFO:0004530)
 PMID:30926973
GWAS1642732_H GCST90479632 high density lipoprotein cholesterol (HDLC, mean, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 3E-41 40.523 rs55707100 0.1594 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1645475_H GCST90479628 hematocrit (maximum, inv-norm transformed) 114,986 African American or Afro-Caribbean individuals, 55,837 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,836 European ancestry individuals C 0.9773 4E-13 12.398 rs55707100 0.06873 hematocrit (EFO:0004348)
 PMID:39024449
GWAS600563_H GCST004603 Platelet count 166,066 European ancestry individuals T 0.0261 2E-23 22.699 rs55707100 0.1142708 platelet count (EFO:0004309)
 PMID:27863252
GWAS1140923_H GCST010083 Hemoglobin levels 684,122 European ancestry individuals T NR 4E-36 35.398 rs55707100 0.086 hemoglobin measurement (EFO:0004509)
 PMID:32327693
GWAS612852_H GCST004607 Plateletcrit 164,339 European ancestry individuals T 0.0261 2E-26 25.699 rs55707100 0.1223192 platelet crit (EFO:0007985)
 PMID:27863252
GWAS1651968_H GCST90475338 hematocrit (maximum, inv-norm transformed) 407,836 European ancestry individuals C 0.9726 6E-22 21.222 rs55707100 0.0781 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1162595_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-35 35 rs55707100 0.151 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1162596_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.973 0.000003 5.523 rs55707100 0.204 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1162597_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 1E-41 41 rs55707100 0.156 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1717309_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals T NR 1E-77 77 rs55707100 0.1504 serum albumin amount (OBA:2050068)
 PMID:33462484
GWAS1664468_H GCST90476365 red cell diameter width (RDW, minimum, inv-norm transformed) 380,819 European ancestry individuals C 0.9726 1E-15 15 rs55707100 0.06702 Red cell distribution width (EFO:0009188)
 PMID:39024449
GWAS1193271_H GCST90012113 Total testosterone levels 194,453 European ancestry men C 0.974801 2E-33 32.699 rs55707100 0.110844 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1194384_H GCST90012114 Total testosterone levels 425,097 European ancestry individuals C 0.97462 8E-12 11.097 rs55707100 0.0269106 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1729460_H GCST90313167 ADA2/VCAM1 protein level ratio 43,509 European ancestry individuals ? NR 6E-16 15.222 rs55707100 0.176881 ADA2/VCAM1 protein level ratio in blood (OBA:2053682)
 PMID:38412862
1 to 20 of 50 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90019494 GWAS Catalog

Note Type Note Reference