GWAS1757675_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1757675_H (total cholesterol measurement, blood VLDL cholesterol amount QTL GWAS1757675 (human)) Homo sapiens

Symbol: GWAS1757675_H
Name: total cholesterol measurement, blood VLDL cholesterol amount QTL GWAS1757675 (human)
RGD ID: 598038376
Trait: total cholesterol measurement, blood VLDL cholesterol amount
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position No map positions available.
Population Stats: Not Available




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1757675_HHumanblood total cholesterol level  IAGPrs55707100405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1757675_HHumanblood VLDL cholesterol amount  IAGPrs55707100405850206 GWAS_CATALOGPMID:35213538
GWAS1757675_HHumantotal cholesterol measurement  IAGPrs55707100405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs55707100)
Human AssemblyChrPosition (strand)Source
GRCh381543,528,519 - 43,528,520RGD_MAPPER_PIPELINE



1 to 20 of 50 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1757675_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.974123 1E-9 9 rs55707100 0.0786307 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1635316_H GCST90479633 high density lipoprotein cholesterol (HDLC, minimm, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 1E-37 37 rs55707100 0.149 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
None Available GCST90479631 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 1E-37 37 rs55707100 0.1477 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1120739_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-18 18 rs55707100 0.096 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS1120740_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 2E-22 21.699 rs55707100 0.102 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS564866_H GCST008702 Triglyceride levels up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals T 0.0328 7E-10 9.155 rs55707100 0.0506 triglyceride measurement (EFO:0004530)
 PMID:30926973
GWAS1642732_H GCST90479632 high density lipoprotein cholesterol (HDLC, mean, inv-norm transformed) 113,085 African American or Afro-Caribbean individuals, 54,914 Hispanic or Latin American individuals, 6,005 East Asian ancestry individuals, 404,121 European ancestry individuals C 0.9772 3E-41 40.523 rs55707100 0.1594 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1645475_H GCST90479628 hematocrit (maximum, inv-norm transformed) 114,986 African American or Afro-Caribbean individuals, 55,837 Hispanic or Latin American individuals, 5,964 East Asian ancestry individuals, 407,836 European ancestry individuals C 0.9773 4E-13 12.398 rs55707100 0.06873 hematocrit (EFO:0004348)
 PMID:39024449
GWAS600563_H GCST004603 Platelet count 166,066 European ancestry individuals T 0.0261 2E-23 22.699 rs55707100 0.1142708 platelet count (EFO:0004309)
 PMID:27863252
GWAS1140923_H GCST010083 Hemoglobin levels 684,122 European ancestry individuals T NR 4E-36 35.398 rs55707100 0.086 hemoglobin measurement (EFO:0004509)
 PMID:32327693
GWAS612852_H GCST004607 Plateletcrit 164,339 European ancestry individuals T 0.0261 2E-26 25.699 rs55707100 0.1223192 platelet crit (EFO:0007985)
 PMID:27863252
GWAS1651968_H GCST90475338 hematocrit (maximum, inv-norm transformed) 407,836 European ancestry individuals C 0.9726 6E-22 21.222 rs55707100 0.0781 hematocrit (EFO:0004348)
 PMID:39024449
GWAS1162595_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.969 1E-35 35 rs55707100 0.151 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1162596_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.973 0.000003 5.523 rs55707100 0.204 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1162597_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 1E-41 41 rs55707100 0.156 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS1717309_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals T NR 1E-77 77 rs55707100 0.1504 serum albumin amount (OBA:2050068)
 PMID:33462484
GWAS1664468_H GCST90476365 red cell diameter width (RDW, minimum, inv-norm transformed) 380,819 European ancestry individuals C 0.9726 1E-15 15 rs55707100 0.06702 Red cell distribution width (EFO:0009188)
 PMID:39024449
GWAS1193271_H GCST90012113 Total testosterone levels 194,453 European ancestry men C 0.974801 2E-33 32.699 rs55707100 0.110844 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1194384_H GCST90012114 Total testosterone levels 425,097 European ancestry individuals C 0.97462 8E-12 11.097 rs55707100 0.0269106 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1729460_H GCST90313167 ADA2/VCAM1 protein level ratio 43,509 European ancestry individuals ? NR 6E-16 15.222 rs55707100 0.176881 ADA2/VCAM1 protein level ratio in blood (OBA:2053682)
 PMID:38412862
1 to 20 of 50 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092968 GWAS Catalog

Note Type Note Reference