GWAS1331947_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1331947_H (blood protein measurement QTL GWAS1331947 (human)) Homo sapiens

Symbol: GWAS1331947_H
Name: blood protein measurement QTL GWAS1331947 (human)
RGD ID: 597235873
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 1.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811,844,830 - 1,844,831RGD_MAPPER_PIPELINEGRCh38
GRCh3711,776,269 - 1,776,270RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1331947_HHumanblood protein measurement  IAGPrs4648727405850206 GWAS_CATALOGPMID:35078996

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1331947_HHumanblood protein amount  IAGPrs4648727405850206 GWAS_CATALOGPMID:35078996

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1331947_HHumanblood protein measurement  IAGPrs4648727405850206 GWAS_CATALOGPMID:35078996

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732785GNB1G protein subunit beta 1117852861891087Human


Peak: (rs4648727)
Human AssemblyChrPosition (strand)Source
GRCh3811,844,830 - 1,844,831RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597284411GWAS1380485_Hhemoglobin measurement QTL GWAS1380485 (human)6e-10hemoglobin measurementhemoglobin measurement (CMO:0000508)118448301844831Human
597235873GWAS1331947_Hblood protein measurement QTL GWAS1331947 (human)1e-17blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)118448301844831Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1331947_H GCST90087569 Serum levels of protein NADK 5,361 Icelandic ancestry individuals A 0.4714 1E-17 17 rs4648727 0.159103 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1380485_H GCST90018957 Hemoglobin 350,474 European ancestry individuals, 152,447 East Asian ancestry individuals A NR 6E-10 9.222 rs4648727 0.0102 hemoglobin measurement (EFO:0004509)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90087569 GWAS Catalog

Note Type Note Reference