GWAS1321432_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1321432_H (self reported educational attainment QTL GWAS1321432 (human)) Homo sapiens

Symbol: GWAS1321432_H
Name: self reported educational attainment QTL GWAS1321432 (human)
RGD ID: 597225358
Trait: self reported educational attainment
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,485,775 - 77,485,776RGD_MAPPER_PIPELINEGRCh38
GRCh37177,951,460 - 77,951,461RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1321432_HHumanself reported educational attainment  IAGPrs7522356405850206 GWAS_CATALOGPMID:30038396

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353587AK5adenylate kinase 517728201977559966Human


Peak: (rs7522356)
Human AssemblyChrPosition (strand)Source
GRCh38177,485,775 - 77,485,776RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
597225358GWAS1321432_Hself reported educational attainment QTL GWAS1321432 (human)7e-10self reported educational attainment17748577577485776Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human
597258853GWAS1354927_Heducational attainment QTL GWAS1354927 (human)1e-29educational attainment17748577577485776Human
597124091GWAS1220165_Hself reported educational attainment QTL GWAS1220165 (human)1e-09self reported educational attainment17748577577485776Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1321432_H GCST006442 Educational attainment (years of education) up to 1,131,881 European ancestry individuals T 0.4404 7E-10 9.155 rs7522356 0.0087 self reported educational attainment (EFO:0004784)
 PMID:30038396
GWAS1220165_H GCST90011874 Noncognitive aspects of educational attainment 510,795 European ancestry individuals G 0.484095 1E-9 9 rs7522356 0.042638525 self reported educational attainment (EFO:0004784)
 PMID:33414549
GWAS1354927_H GCST90105038 Educational attainment 3,037,499 European ancestry individuals T 0.4429 1E-29 29 rs7522356 0.0119283 educational attainment (EFO:0011015)
 PMID:35361970
Database
Acc Id
Source(s)
GWAS Catalog GCST006442 GWAS Catalog

Note Type Note Reference