GWAS1316615_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1316615_H (cystatin C measurement QTL GWAS1316615 (human)) Homo sapiens

Symbol: GWAS1316615_H
Name: cystatin C measurement QTL GWAS1316615 (human)
RGD ID: 597220541
Trait: cystatin C measurement
Measurement Type: blood cystatin C level   (CMO:0002777)    
LOD Score: Not Available
P Value: 2.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,499,170 - 77,499,171RGD_MAPPER_PIPELINEGRCh38
GRCh37177,964,855 - 77,964,856RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1316615_HHumanblood cystatin C level  IAGPrs11806197405850206 GWAS_CATALOGPMID:33462484

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1316615_HHumancystatin C measurement  IAGPrs11806197405850206 GWAS_CATALOGPMID:33462484

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353587AK5adenylate kinase 517728201977559966Human


Peak: (rs11806197)
Human AssemblyChrPosition (strand)Source
GRCh38177,499,170 - 77,499,171RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
597220541GWAS1316615_Hcystatin C measurement QTL GWAS1316615 (human)2e-14cystatin C measurementblood cystatin C level (CMO:0002777)17749917077499171Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human
597089081GWAS1185155_Hmean reticulocyte volume QTL GWAS1185155 (human)5e-10reticulocyte morphology trait (VT:0002424)mean corpuscular volume (CMO:0000038)17749917077499171Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1316615_H GCST90019504 Cystatin C levels 342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals G NR 2E-14 13.699 rs11806197 0.0233 cystatin C measurement (EFO:0004617)
 PMID:33462484
GWAS1185155_H GCST90002396 Mean reticulocyte volume 408,112 British individuals G 0.191298 5E-10 9.302 rs11806197 0.017499482 mean reticulocyte volume (EFO:0010701)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90019504 GWAS Catalog

Note Type Note Reference