GWAS1296978_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1296978_H (diastolic blood pressure QTL GWAS1296978 (human)) Homo sapiens

Symbol: GWAS1296978_H
Name: diastolic blood pressure QTL GWAS1296978 (human)
RGD ID: 597200904
Trait: diastolic blood pressure
Measurement Type: diastolic blood pressure   (CMO:0000005)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,267,648 - 51,267,649RGD_MAPPER_PIPELINEGRCh38
GRCh371551,559,845 - 51,559,846RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1296978_HHumandiastolic blood pressure  IAGPrs28490942405850206 GWAS_CATALOGPMID:38689001

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1296978_HHumandiastolic blood pressure  IAGPrs28490942405850206 GWAS_CATALOGPMID:38689001

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
12791128MIR4713HGMIR4713 host gene155103748851293912Human
11084865PIRC66piwi-interacting RNA cluster 66155103758451322397Human
1606587CYP19A1cytochrome P450 family 19 subfamily A member 1155120805751338596Human


Peak: (rs28490942)
Human AssemblyChrPosition (strand)Source
GRCh381551,267,648 - 51,267,649RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597200904GWAS1296978_Hdiastolic blood pressure QTL GWAS1296978 (human)3e-09diastolic blood pressurediastolic blood pressure (CMO:0000005)155126764851267649Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597313331GWAS1409405_Htotal blood protein measurement QTL GWAS1409405 (human)6e-09total blood protein measurementblood protein measurement (CMO:0000028)155126764851267649Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1296978_H GCST90310295 Diastolic blood pressure 1,028,980 European ancestry individuals C NR 3E-9 8.523 rs28490942 0.0892 diastolic blood pressure (EFO:0006336)
 PMID:38689001
GWAS1409405_H GCST90018976 Serum total protein levels 314,921 European ancestry individuals, 133,321 East Asian ancestry individuals C NR 6E-9 8.222 rs28490942 0.0123 total blood protein measurement (EFO:0004536)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90310295 GWAS Catalog

Note Type Note Reference