GWAS1291346_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1291346_H (total cholesterol measurement QTL GWAS1291346 (human)) Homo sapiens

Symbol: GWAS1291346_H
Name: total cholesterol measurement QTL GWAS1291346 (human)
RGD ID: 597195272
Trait: total cholesterol measurement
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,548,898 - 77,548,899RGD_MAPPER_PIPELINEGRCh38
GRCh37178,014,583 - 78,014,584RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1291346_HHumanblood total cholesterol level  IAGPrs34026852405850206 GWAS_CATALOGPMID:38116116

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1291346_HHumantotal cholesterol measurement  IAGPrs34026852405850206 GWAS_CATALOGPMID:38116116

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353587AK5adenylate kinase 517728201977559966Human


Peak: (rs34026852)
Human AssemblyChrPosition (strand)Source
GRCh38177,548,898 - 77,548,899RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597195272GWAS1291346_Htotal cholesterol measurement QTL GWAS1291346 (human)3e-09total cholesterol measurementblood total cholesterol level (CMO:0000051)17754889877548899Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1291346_H GCST90278644 Total cholesterol levels 92,615 Taiwanese ancestry individuals ? NR 3E-9 8.523 rs34026852 N/A total cholesterol measurement (EFO:0004574)
 PMID:38116116
Database
Acc Id
Source(s)
GWAS Catalog GCST90278644 GWAS Catalog

Note Type Note Reference