GWAS1275125_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1275125_H (protein measurement QTL GWAS1275125 (human)) Homo sapiens

Symbol: GWAS1275125_H
Name: protein measurement QTL GWAS1275125 (human)
RGD ID: 597179051
Trait: protein measurement
LOD Score: Not Available
P Value: 8E-120
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38124,965,206 - 24,965,207RGD_MAPPER_PIPELINEGRCh38
GRCh37125,291,697 - 25,291,698RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1275125_HHumanprotein measurement  IAGPrs188468174405850206 GWAS_CATALOGPMID:34648354

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs188468174)
Human AssemblyChrPosition (strand)Source
GRCh38124,965,206 - 24,965,207RGD_MAPPER_PIPELINE


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597106354GWAS1202428_Hreticulocyte count QTL GWAS1202428 (human)3e-13reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)12496520624965207Human
597029459GWAS1125533_Hbalding measurement QTL GWAS1125533 (human)2e-42hair amount (VT:0000416)coat/hair morphological measurement (CMO:0001807)12496520624965207Human
597107184GWAS1203258_Hreticulocyte measurement QTL GWAS1203258 (human)4e-12reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)12496520624965207Human
597176946GWAS1273020_Himmunoglobulin M measurement QTL GWAS1273020 (human)7e-12blood immunoglobulin M amount (VT:0010481)blood immunoglobulin M level (CMO:0002092)12496520624965207Human
597180883GWAS1276957_Hglutaminyl-peptide cyclotransferase measurement QTL GWAS1276957 (human)5e-14glutaminyl-peptide cyclotransferase measurement12496520624965207Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597290197GWAS1386271_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1386271 (human)9e-13free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)12496520624965207Human
597179636GWAS1275710_Hprotein measurement QTL GWAS1275710 (human)5e-17protein measurement12496520624965207Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human

1 to 10 of 24 rows


1 to 20 of 23 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1275125_H GCST90248001 Immunoglobulin A levels 10,708 European ancestry individuals T 0.01 8E-120 119.097 rs188468174 1.369 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1125533_H GCST007038 Balding type 1 approximately 208,000 European ancestry individuals ? NR 2E-42 41.699 rs188468174 N/A balding measurement (EFO:0007825)
 PMID:30595370
GWAS1157590_H GCST90002292 Basophil count 474,001 European ancestry individuals C 0.985766 4E-10 9.398 rs188468174 0.055334 basophil count (EFO:0005090)
 PMID:32888493
GWAS1200273_H GCST006661 Male-pattern baldness 52,874 British ancestry males T NR 5E-21 20.302 rs188468174 0.238642 PMID:28196072
GWAS719676_H GCST007020 Male-pattern baldness 205,327 European ancestry males T 0.0140221 6E-93 92.222 rs188468174 0.266837 balding measurement (EFO:0007825)
 PMID:30573740
GWAS1202428_H GCST90002405 Reticulocyte count 408,112 British individuals T 0.0143180000000001 3E-13 12.523 rs188468174 0.06925445 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS1203258_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals T 0.0143140000000001 4E-12 11.398 rs188468174 0.06596895 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1740345_H GCST008568 IgA levels 16,883 Icelandic ancestry individuals T 0.0084 8E-55 54.097 rs188468174 0.9 serum IgA amount (OBA:2050074)
 PMID:28628107
None Available GCST90092821 Glycoprotein acetyls levels 115,082 European ancestry individuals C 0.985159 4E-10 9.398 rs188468174 0.107527 glycoprotein measurement (EFO:0004555)
 PMID:35213538
GWAS1266642_H GCST90249565 SLAM family member 7 levels 10,708 European ancestry individuals T 0.01 4E-25 24.398 rs188468174 0.62 SLAM family member 7 measurement (EFO:0008287)
 PMID:34648354
GWAS1270870_H GCST90246946 CD5 antigen-like levels 10,708 European ancestry individuals T 0.01 6E-38 37.222 rs188468174 0.774 CD5 antigen-like measurement (EFO:0020248)
 PMID:34648354
GWAS1273020_H GCST90248020 Immunoglobulin M levels 10,708 European ancestry individuals T 0.01 7E-12 11.155 rs188468174 0.398 immunoglobulin M measurement (EFO:0020466)
 PMID:34648354
GWAS1273552_H GCST90248458 Microfibrillar-associated protein 2 levels 10,708 European ancestry individuals T 0.01 2E-15 14.699 rs188468174 0.472 microfibrillar-associated protein 2 measurement (EFO:0801801)
 PMID:34648354
GWAS1275710_H GCST90249709 Serine/threonine-protein phosphatase 4 regulatory subunit 3A levels 10,708 European ancestry individuals T 0.01 5E-17 16.302 rs188468174 0.474 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1276598_H GCST90248075 Interleukin-5 receptor subunit alpha levels 10,708 European ancestry individuals T 0.01 1E-18 18 rs188468174 0.517 interleukin-5 receptor subunit alpha measurement (EFO:0801730)
 PMID:34648354
GWAS1276957_H GCST90247789 Glutaminyl-peptide cyclotransferase levels 10,708 European ancestry individuals T 0.01 5E-14 13.302 rs188468174 0.428 glutaminyl-peptide cyclotransferase measurement (EFO:0802570)
 PMID:34648354
GWAS1336576_H GCST90129328 Immunoglobulin N-glycan 8 levels 2,020 Korculan or Shetland Isles (founder/genetic isolate) individuals T 0.014 3E-12 11.523 rs188468174 1.12 serum IgG glycosylation measurement (EFO:0005193)
 PMID:35332118
GWAS1336577_H GCST90129330 Immunoglobulin N-glycan 10 levels 2,020 Korculan or Shetland Isles (founder/genetic isolate) individuals T 0.014 1E-11 11 rs188468174 1.124 serum IgG glycosylation measurement (EFO:0005193)
 PMID:35332118
GWAS1336758_H GCST90129331 Immunoglobulin N-glycan 11 levels 2,020 Korculan or Shetland Isles (founder/genetic isolate) individuals T 0.014 6E-17 16.222 rs188468174 1.266 serum IgG glycosylation measurement (EFO:0005193)
 PMID:35332118
GWAS1336769_H GCST90129343 Immunoglobulin N-glycan 23 levels 2,020 Korculan or Shetland Isles (founder/genetic isolate) individuals T 0.014 9E-16 15.046 rs188468174 1.251 serum IgG glycosylation measurement (EFO:0005193)
 PMID:35332118
1 to 20 of 23 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90248001 GWAS Catalog

Note Type Note Reference