GWAS1250311_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1250311_H (phospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1250311 (human)) Homo sapiens

Symbol: GWAS1250311_H
Name: phospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1250311 (human)
RGD ID: 597154237
Trait: phospholipid measurement, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 8.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,563,549 - 58,563,550RGD_MAPPER_PIPELINEGRCh38
GRCh371558,855,748 - 58,855,749RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1250311_HHumanblood high density lipoprotein cholesterol level  IAGPrs113298164405850206 GWAS_CATALOGPMID:35213538

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1250311_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs113298164405850206 GWAS_CATALOGPMID:35213538
GWAS1250311_HHumanphospholipid measurement  IAGPrs113298164405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human


Peak: (rs113298164)
Human AssemblyChrPosition (strand)Source
GRCh381558,563,549 - 58,563,550RGD_MAPPER_PIPELINE


1 to 10 of 101 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597154965GWAS1251039_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1251039 (human)6e-28free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155856354958563550Human
597298076GWAS1394150_Hphosphatidylethanolamine measurement QTL GWAS1394150 (human)6e-10phosphatidylethanolamine measurement155856354958563550Human
597261968GWAS1358042_Hcholesteryl ester measurement, high density lipoprotein cholesterol measurement QTL GWAS1358042 (human)7e-24blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)155856354958563550Human
597158045GWAS1254119_Homega-6 polyunsaturated fatty acid measurement QTL GWAS1254119 (human)1e-10omega-6 polyunsaturated fatty acid measurement155856354958563550Human
597281428GWAS1377502_H1-palmitoyl-GPE (16:0) measurement QTL GWAS1377502 (human)5e-181-palmitoyl-GPE (16:0) measurement155856354958563550Human
597302165GWAS1398239_Hcholine measurement QTL GWAS1398239 (human)1e-22choline measurement155856354958563550Human
597152408GWAS1248482_Htriglyceride measurement, intermediate density lipoprotein measurement QTL GWAS1248482 (human)5e-57triglyceride measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155856354958563550Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597295235GWAS1391309_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS1391309 (human)0.0000002blood lipid amount (VT:0003949)155856354958563550Human
597258882GWAS1354956_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1354956 (human)1e-16triglycerides:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155856354958563550Human

1 to 10 of 101 rows


1 to 20 of 168 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1250311_H GCST90092852 Phospholipid levels in large HDL 115,082 European ancestry individuals C 0.998106 8E-27 26.097 rs113298164 0.442831 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1126303_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 4E-8 7.398 rs113298164 0.6299 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1126304_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 5E-11 10.302 rs113298164 0.7462 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1126307_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 2E-9 8.699 rs113298164 0.6857 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1210945_H GCST90025955 Apolipoprotein A1 levels 398,508 European ancestry individuals ? NR 2E-59 58.699 rs113298164 0.371182 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:34226706
GWAS1215758_H GCST90025956 HDL cholesterol levels 400,754 European ancestry individuals ? NR 1E-54 54 rs113298164 0.337195 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34226706
GWAS1216332_H GCST90025957 Triglyceride levels 437,532 European ancestry individuals ? NR 8E-13 12.097 rs113298164 0.162109 triglyceride measurement (EFO:0004530)
 PMID:34226706
GWAS1244910_H GCST90092865 Phospholipids to total lipids ratio in large LDL 115,082 European ancestry individuals C 0.998106 8E-50 49.097 rs113298164 0.696708 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS1245541_H GCST90092897 Free cholesterol to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 5E-25 24.302 rs113298164 0.43075 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1245907_H GCST90092866 Triglyceride levels in large LDL 115,082 European ancestry individuals C 0.998106 4E-49 48.398 rs113298164 0.678011 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1246720_H GCST90092903 Triglycerides to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 7E-15 14.155 rs113298164 0.350226 triglycerides:total lipids ratio (EFO:0020947)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247363_H GCST90092895 Cholesteryl esters to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 3E-13 12.523 rs113298164 0.332584 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247374_H GCST90092902 Triglyceride levels in medium HDL 115,082 European ancestry individuals C 0.998106 9E-28 27.046 rs113298164 0.504226 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247512_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals C 0.998106 8E-25 24.097 rs113298164 0.471288 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1248059_H GCST90092849 Free cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals C 0.998106 3E-18 17.523 rs113298164 0.381663 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248124_H GCST90092905 Cholesterol to total lipids ratio in medium LDL 115,082 European ancestry individuals C 0.998106 2E-19 18.699 rs113298164 0.423848 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1248199_H GCST90092867 Triglycerides to total lipids ratio in large LDL 115,082 European ancestry individuals C 0.998106 1E-32 32 rs113298164 0.543883 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1248381_H GCST90092900 Phospholipid levels in medium HDL 115,082 European ancestry individuals C 0.998106 4E-9 8.398 rs113298164 0.259313 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248482_H GCST90092841 Triglyceride levels in IDL 115,082 European ancestry individuals C 0.998106 5E-57 56.302 rs113298164 0.72884 triglyceride measurement (EFO:0004530)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1248564_H GCST90092896 Free cholesterol levels in medium HDL 115,082 European ancestry individuals C 0.998106 9E-14 13.046 rs113298164 0.319066 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
1 to 20 of 168 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092852 GWAS Catalog

Note Type Note Reference