GWAS1778346_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1778346_H (free cholesterol:total lipids ratio, blood VLDL cholesterol amount QTL GWAS1778346 (human)) Homo sapiens

Symbol: GWAS1778346_H
Name: free cholesterol:total lipids ratio, blood VLDL cholesterol amount QTL GWAS1778346 (human)
RGD ID: 598059047
Trait: free cholesterol:total lipids ratio, blood VLDL cholesterol amount
LOD Score: Not Available
P Value: 7.0E-11
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1778346_HHumanblood VLDL cholesterol amount  IAGPrs113298164405850206 GWAS_CATALOGPMID:35213538
GWAS1778346_HHumanfree cholesterol:total lipids ratio  IAGPrs113298164405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs113298164)
Human AssemblyChrPosition (strand)Source
GRCh381558,563,549 - 58,563,550RGD_MAPPER_PIPELINE



1 to 20 of 168 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1778346_H GCST90092873 Free cholesterol to total lipids ratio in large VLDL 115,071 European ancestry individuals C 0.998106 7E-11 10.155 rs113298164 0.30422 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1126303_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 4E-8 7.398 rs113298164 0.6299 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1126304_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 5E-11 10.302 rs113298164 0.7462 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1126307_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 2E-9 8.699 rs113298164 0.6857 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1210945_H GCST90025955 Apolipoprotein A1 levels 398,508 European ancestry individuals ? NR 2E-59 58.699 rs113298164 0.371182 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:34226706
GWAS1215758_H GCST90025956 HDL cholesterol levels 400,754 European ancestry individuals ? NR 1E-54 54 rs113298164 0.337195 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34226706
GWAS1216332_H GCST90025957 Triglyceride levels 437,532 European ancestry individuals ? NR 8E-13 12.097 rs113298164 0.162109 triglyceride measurement (EFO:0004530)
 PMID:34226706
GWAS1244910_H GCST90092865 Phospholipids to total lipids ratio in large LDL 115,082 European ancestry individuals C 0.998106 8E-50 49.097 rs113298164 0.696708 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS1245541_H GCST90092897 Free cholesterol to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 5E-25 24.302 rs113298164 0.43075 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1245907_H GCST90092866 Triglyceride levels in large LDL 115,082 European ancestry individuals C 0.998106 4E-49 48.398 rs113298164 0.678011 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1246720_H GCST90092903 Triglycerides to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 7E-15 14.155 rs113298164 0.350226 triglycerides:total lipids ratio (EFO:0020947)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247363_H GCST90092895 Cholesteryl esters to total lipids ratio in medium HDL 115,082 European ancestry individuals C 0.998106 3E-13 12.523 rs113298164 0.332584 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247374_H GCST90092902 Triglyceride levels in medium HDL 115,082 European ancestry individuals C 0.998106 9E-28 27.046 rs113298164 0.504226 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247512_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals C 0.998106 8E-25 24.097 rs113298164 0.471288 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1248059_H GCST90092849 Free cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals C 0.998106 3E-18 17.523 rs113298164 0.381663 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248124_H GCST90092905 Cholesterol to total lipids ratio in medium LDL 115,082 European ancestry individuals C 0.998106 2E-19 18.699 rs113298164 0.423848 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1248199_H GCST90092867 Triglycerides to total lipids ratio in large LDL 115,082 European ancestry individuals C 0.998106 1E-32 32 rs113298164 0.543883 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1248381_H GCST90092900 Phospholipid levels in medium HDL 115,082 European ancestry individuals C 0.998106 4E-9 8.398 rs113298164 0.259313 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248482_H GCST90092841 Triglyceride levels in IDL 115,082 European ancestry individuals C 0.998106 5E-57 56.302 rs113298164 0.72884 triglyceride measurement (EFO:0004530)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1248564_H GCST90092896 Free cholesterol levels in medium HDL 115,082 European ancestry individuals C 0.998106 9E-14 13.046 rs113298164 0.319066 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
1 to 20 of 168 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092873 GWAS Catalog

Note Type Note Reference