GWAS1243187_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1243187_H (triglyceride measurement QTL GWAS1243187 (human)) Homo sapiens

Symbol: GWAS1243187_H
Name: triglyceride measurement QTL GWAS1243187 (human)
RGD ID: 597147113
Trait: triglyceride measurement
Measurement Type: blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,967,739 - 46,967,740RGD_MAPPER_PIPELINEGRCh38
GRCh372045,596,378 - 45,596,379RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243187_HHumanblood triglyceride level  IAGPrs6063046405850206 GWAS_CATALOGPMID:36376304

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243187_HHumantriglyceride measurement  IAGPrs6063046405850206 GWAS_CATALOGPMID:36376304

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs6063046)
Human AssemblyChrPosition (strand)Source
GRCh382046,967,739 - 46,967,740RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597270255GWAS1366329_Htype 2 diabetes mellitus QTL GWAS1366329 (human)7e-10type 2 diabetes mellitus204696773946967740Human
597270068GWAS1366142_Htype 2 diabetes mellitus QTL GWAS1366142 (human)8e-11type 2 diabetes mellitus204696773946967740Human
597147113GWAS1243187_Htriglyceride measurement QTL GWAS1243187 (human)1e-11triglyceride measurementblood triglyceride level (CMO:0000118)204696773946967740Human
597582657GWAS1639517_Htype 2 diabetes mellitus QTL GWAS1639517 (human)5e-24type 2 diabetes mellitus204696773946967740Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1243187_H GCST90179149 Triglyceride levels (MTAG) 361,194 European ancestry individuals A NR 1E-11 11 rs6063046 0.018569 triglyceride measurement (EFO:0004530)
 PMID:36376304
GWAS1639517_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls A 0.79919 5E-24 23.302 rs6063046 N/A PMID:38374256
GWAS1366142_H GCST90132183 Type 2 diabetes 251,740 European ancestry individuals, 139,705 East Asian ancestry individuals, 40,737 South Asian ancestry individuals, 27,417 Hispanic individuals, 30,167 African American individuals, 2,426 Zulu ancestry individuals A NR 8E-11 10.097 rs6063046 1.04 PMID:35551307
GWAS1366329_H GCST90132184 Type 2 diabetes 251,740 European ancestry individuals A 0.727 7E-10 9.155 rs6063046 0.045 PMID:35551307
Database
Acc Id
Source(s)
GWAS Catalog GCST90179149 GWAS Catalog

Note Type Note Reference