GWAS1218540_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1218540_H (blood protein measurement QTL GWAS1218540 (human)) Homo sapiens

Symbol: GWAS1218540_H
Name: blood protein measurement QTL GWAS1218540 (human)
RGD ID: 597122466
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 3E-91
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,596,053 - 22,596,054RGD_MAPPER_PIPELINEGRCh38
GRCh37122,922,546 - 22,922,547RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1218540_HHumanblood protein measurement  IAGPrs209692405850206 GWAS_CATALOGPMID:35078996

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1218540_HHumanblood protein amount  IAGPrs209692405850206 GWAS_CATALOGPMID:35078996

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1218540_HHumanblood protein measurement  IAGPrs209692405850206 GWAS_CATALOGPMID:35078996

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350663EPHA8EPH receptor A812256348922603595Human


Peak: (rs209692)
Human AssemblyChrPosition (strand)Source
GRCh38122,596,053 - 22,596,054RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597122466GWAS1218540_Hblood protein measurement QTL GWAS1218540 (human)3e-91blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)12259605322596054Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1218540_H GCST90087782 Serum levels of protein C1QC 5,368 Icelandic ancestry individuals A 0.2929 3E-91 90.523 rs209692 0.421977 blood protein measurement (EFO:0007937)
 PMID:35078996
Database
Acc Id
Source(s)
GWAS Catalog GCST90087782 GWAS Catalog

Note Type Note Reference