GWAS1197417_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1197417_H (low density lipoprotein cholesterol measurement QTL GWAS1197417 (human)) Homo sapiens

Symbol: GWAS1197417_H
Name: low density lipoprotein cholesterol measurement QTL GWAS1197417 (human)
RGD ID: 597101343
Trait: low density lipoprotein cholesterol measurement
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: Not Available
P Value: 8.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382240,872,921 - 40,872,922RGD_MAPPER_PIPELINEGRCh38
GRCh372241,268,925 - 41,268,926RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1197417_HHumanblood low density lipoprotein cholesterol level  IAGPrs138352405850206 GWAS_CATALOGPMID:32493714

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1197417_HHumanlow density lipoprotein cholesterol measurement  IAGPrs138352405850206 GWAS_CATALOGPMID:32493714

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603202XPNPEP3X-prolyl aminopeptidase 3224085714840932815Human


Peak: (rs138352)
Human AssemblyChrPosition (strand)Source
GRCh382240,872,921 - 40,872,922RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597101343GWAS1197417_Hlow density lipoprotein cholesterol measurement QTL GWAS1197417 (human)8e-16low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)224087292140872922Human
597321846GWAS1417920_Hlow density lipoprotein cholesterol measurement QTL GWAS1417920 (human)7e-16low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)224087292140872922Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1197417_H GCST90002412 Low density lipoprotein cholesterol levels 431,167 European ancestry individuals T 0.341431 8E-16 15.097 rs138352 0.0163988 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32493714
GWAS1417920_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals G 0.65408 7E-16 15.155 rs138352 0.0137988 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
Database
Acc Id
Source(s)
GWAS Catalog GCST90002412 GWAS Catalog

Note Type Note Reference