GWAS1180645_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1180645_H (mean corpuscular hemoglobin concentration QTL GWAS1180645 (human)) Homo sapiens

Symbol: GWAS1180645_H
Name: mean corpuscular hemoglobin concentration QTL GWAS1180645 (human)
RGD ID: 597084571
Trait: mean corpuscular hemoglobin concentration
Measurement Type: mean corpuscular hemoglobin concentration   (CMO:0000291)    
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,006,999 - 40,007,000RGD_MAPPER_PIPELINEGRCh38
GRCh371540,299,200 - 40,299,201RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1180645_HHumanmean corpuscular hemoglobin concentration  IAGPrs143968955405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1180645_HHumanmean corpuscular hemoglobin concentration  IAGPrs143968955405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322904EIF2AK4eukaryotic translation initiation factor 2 alpha kinase 4153993411540035591Human


Peak: (rs143968955)
Human AssemblyChrPosition (strand)Source
GRCh381540,006,999 - 40,007,000RGD_MAPPER_PIPELINE


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597307786GWAS1403860_Herythrocyte count QTL GWAS1403860 (human)1e-16erythrocyte countred blood cell count (CMO:0000025)154000699940007000Human
597303195GWAS1399269_Hmean corpuscular hemoglobin QTL GWAS1399269 (human)1e-24mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)154000699940007000Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407172894GWAS821870_Hmean corpuscular hemoglobin QTL GWAS821870 (human)5e-28mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)154000699940007000Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 12 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1180645_H GCST90002391 Mean corpuscular hemoglobin concentration 408,112 British individuals T 0.186701 1E-14 14 rs143968955 0.0220284 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888494
GWAS1736784_H GCST90002392 Mean corpuscular volume 408,112 British individuals T 0.186727 4E-17 16.398 rs143968955 0.0241905 erythrocyte volume (OBA:0003460)
 PMID:32888494
GWAS821870_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals T 0.186692 5E-28 27.302 rs143968955 0.0312372 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS1399269_H GCST90018964 Mean corpuscular hemoglobin 350,472 European ancestry individuals, 128,028 East Asian ancestry individuals T NR 1E-24 24 rs143968955 0.031 mean corpuscular hemoglobin (EFO:0004527)
 PMID:34594039
GWAS1403860_H GCST90018971 Red blood cell count 350,475 European ancestry individuals, 153,512 East Asian ancestry individuals T NR 1E-16 16 rs143968955 0.0217 erythrocyte count (EFO:0004305)
 PMID:34594039
GWAS1811005_H GCST90018966 Mean corpuscular volume 350,473 European ancestry individuals, 129,832 East Asian ancestry individuals T NR 7E-16 15.155 rs143968955 0.0244 erythrocyte volume (OBA:0003460)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90002391 GWAS Catalog

Note Type Note Reference