GWAS1122309_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1122309_H (blood protein measurement QTL GWAS1122309 (human)) Homo sapiens

Symbol: GWAS1122309_H
Name: blood protein measurement QTL GWAS1122309 (human)
RGD ID: 597026235
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,568,500 - 41,568,501RGD_MAPPER_PIPELINEGRCh38
GRCh371541,860,698 - 41,860,699RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122309_HHumanblood protein measurement  IAGPrs2289743405850206 GWAS_CATALOGPMID:30072576

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122309_HHumanblood protein amount  IAGPrs2289743405850206 GWAS_CATALOGPMID:30072576

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122309_HHumanblood protein measurement  IAGPrs2289743405850206 GWAS_CATALOGPMID:30072576

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736404TYRO3TYRO3 protein tyrosine kinase154155921241583589Human
155762842LOC127829368NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:41860643-41861148154156844541568950Human


Peak: (rs2289743)
Human AssemblyChrPosition (strand)Source
GRCh381541,568,500 - 41,568,501RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597026235GWAS1122309_Hblood protein measurement QTL GWAS1122309 (human)2e-09blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)154156850041568501Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1122309_H GCST006585 Blood protein levels 3,200 European ancestry individuals C 0.69109375 2E-9 8.699 rs2289743 0.16069697 blood protein measurement (EFO:0007937)
 PMID:30072576
Database
Acc Id
Source(s)
GWAS Catalog GCST006585 GWAS Catalog

Note Type Note Reference