GWAS1077956_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1077956_H (Red cell distribution width QTL GWAS1077956 (human)) Homo sapiens

Symbol: GWAS1077956_H
Name: Red cell distribution width QTL GWAS1077956 (human)
RGD ID: 596958437
Trait: Red cell distribution width
LOD Score: Not Available
P Value: 1.0E-23
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,796,321 - 11,796,322RGD_MAPPER_PIPELINEGRCh38
GRCh37111,856,378 - 11,856,379RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733483MTHFRmethylenetetrahydrofolate reductase11178572311805964Human


Peak: (rs1801133)
Human AssemblyChrPosition (strand)Source
GRCh38111,796,321 - 11,796,322RGD_MAPPER_PIPELINE


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597098134GWAS1194208_Hhomocysteine measurement QTL GWAS1194208 (human)2e-11homocysteine measurement11179632111796322Human
597599708GWAS1656568_Hmean corpuscular hemoglobin concentration QTL GWAS1656568 (human)1e-24mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)11179632111796322Human
597249373GWAS1345447_Hage at menopause QTL GWAS1345447 (human)9e-08age at menopause11179632111796322Human
597287645GWAS1383719_Hdiastolic blood pressure QTL GWAS1383719 (human)4e-11diastolic blood pressurediastolic blood pressure (CMO:0000005)11179632111796322Human
597461977GWAS1558051_Hdiastolic blood pressure QTL GWAS1558051 (human)7e-24diastolic blood pressurediastolic blood pressure (CMO:0000005)11179632111796322Human
407023173GWAS672149_Hhomocysteine measurement QTL GWAS672149 (human)4e-104homocysteine measurement11179632111796322Human
406946950GWAS595926_Hhomocysteine measurement QTL GWAS595926 (human)8e-35homocysteine measurement11179632111796322Human
597054225GWAS1150299_Hmultiple sclerosis QTL GWAS1150299 (human)2e-15multiple sclerosis11179632111796322Human
597057233GWAS1153307_Hfolic acid measurement QTL GWAS1153307 (human)4e-19folic acid measurement11179632111796322Human

1 to 10 of 43 rows


1 to 20 of 45 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1640349_H GCST90479674 mean corpuscular hemoglobin (MCH, minimum, inv-norm transformed) 114,836 African American or Afro-Caribbean individuals, 55,792 Hispanic or Latin American individuals, 5,944 East Asian ancestry individuals, 407,317 European ancestry individuals G 0.7014 9E-17 16.046 rs1801133 0.02785 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1640792_H GCST90479672 mean corpuscular hemoglobin (MCH, maximum, inv-norm transformed) 114,852 African American or Afro-Caribbean individuals, 55,783 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,288 European ancestry individuals G 0.7014 4E-24 23.398 rs1801133 0.03511 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1641137_H GCST90479673 mean corpuscular hemoglobin (MCH, mean, inv-norm transformed) 114,855 African American or Afro-Caribbean individuals, 55,792 Hispanic or Latin American individuals, 5,944 East Asian ancestry individuals, 407,342 European ancestry individuals G 0.7014 1E-21 21 rs1801133 0.03325 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS595926_H GCST000367 Homocysteine levels 13,974 European ancestry females A 0.33 8E-35 34.097 rs1801133 0.05 homocysteine measurement (EFO:0004578)
 PMID:20031578
GWAS1143560_H GCST007074 Red cell distribution width approximately 445,000 European ancestry individuals ? NR 1E-23 23 rs1801133 N/A Red cell distribution width (EFO:0009188)
 PMID:30595370
GWAS1150299_H GCST009597 Multiple sclerosis 14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls G NR 2E-15 14.699 rs1801133 1.107052 PMID:31604244
GWAS1153307_H GCST006137 Serum folate levels 1,999 Han Chinese ancestry individuals ? NR 4E-19 18.398 rs1801133 N/A folic acid measurement (EFO:0005111)
 PMID:29953918
GWAS1654946_H GCST90475442 mean corpuscular hemoglobin (MCH, maximum, inv-norm transformed) 407,288 European ancestry individuals G 0.6604 3E-38 37.523 rs1801133 0.03699 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1656459_H GCST90475446 mean corpuscular hemoglobin (MCH, mean, inv-norm transformed) 407,342 European ancestry individuals G 0.6604 2E-34 33.699 rs1801133 0.03547 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1656568_H GCST90475450 mean corpuscular hemoglobin (MCH, minimum, inv-norm transformed) 407,317 European ancestry individuals G 0.6604 1E-24 24 rs1801133 0.02976 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1172151_H GCST006054 High altitude adaptation 3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals A 0.333 6E-9 8.222 rs1801133 N/A high altitude adaptation (EFO:0009105)
 PMID:28373541
GWAS672149_H GCST002087 Homocysteine levels 44,147 European ancestry individuals A 0.34 4E-104 103.398 rs1801133 0.1583 homocysteine measurement (EFO:0004578)
 PMID:23824729
GWAS1186393_H GCST90002396 Mean reticulocyte volume 408,112 British individuals A 0.33642 1E-12 12 rs1801133 0.018249054 mean reticulocyte volume (EFO:0010701)
 PMID:32888494
GWAS1193097_H GCST007579 Serum folate levels 2,232 Irish ancestry individuals ? NR 3E-11 10.523 rs1801133 0.04932 folic acid measurement (EFO:0005111)
 PMID:30339177
GWAS1193099_H GCST007578 Plasma homocysteine levels 2,232 Irish ancestry individuals ? NR 1E-19 19 rs1801133 0.03087 homocysteine measurement (EFO:0004578)
 PMID:30339177
None Available GCST90479963 Folate-deficiency anemia (PheCode 281.13) 450 African American or Afro-Caribbean cases, 120,910 African American or Afro-Caribbean controls, 903 European ancestry cases, 449,159 European ancestry controls G 0.7091 3E-11 10.523 rs1801133 0.2882 PMID:39024449
GWAS1194208_H GCST009171 Homocysteine levels 1,208 European ancestry individuals ? NR 2E-11 10.699 rs1801133 N/A homocysteine measurement (EFO:0004578)
 PMID:23696881
GWAS1223945_H GCST90319528 Vitamin B9 levels 9,947 Han Chinese ancestry individuals, 294 individuals A NR 6E-14 13.222 rs1801133 0.12 folic acid measurement (EFO:0005111)
 PMID:37479695
GWAS1223951_H GCST90319530 Homocysteine levels 9,947 Han Chinese ancestry individuals, 294 individuals A NR 6E-69 68.222 rs1801133 0.26 homocysteine measurement (EFO:0004578)
 PMID:37479695
GWAS1235642_H GCST90277443 Serum folate levels 21,708 Danish, Icelandic ancestry individuals G 0.668 1E-52 52 rs1801133 N/A folic acid measurement (EFO:0005111)
 PMID:23754956
1 to 20 of 45 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST007074 GWAS Catalog

Note Type Note Reference