GWAS1030921_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1030921_H (blood protein measurement QTL GWAS1030921 (human)) Homo sapiens

Symbol: GWAS1030921_H
Name: blood protein measurement QTL GWAS1030921 (human)
RGD ID: 407381945
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 5.0E-71
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381550,493,827 - 50,493,828RGD_MAPPER_PIPELINEGRCh38
GRCh371550,786,024 - 50,786,025RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1030921_HHumanblood protein measurement  IAGPrs16963739405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1030921_HHumanblood protein measurement  IAGPrs16963739405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1312730USP8ubiquitin specific peptidase 8155042440550514421Human
1343119USP50ubiquitin specific peptidase 50155049302550546666Human

Position Markers

Peak: (rs16963739)
Human AssemblyChrPosition (strand)Source
GRCh381550,493,827 - 50,493,828RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407368230GWAS1017206_Hblood protein measurement QTL GWAS1017206 (human)7e-48blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407386889GWAS1035865_Hblood protein measurement QTL GWAS1035865 (human)2e-51blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407365350GWAS1014326_Hblood protein measurement QTL GWAS1014326 (human)5e-58blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407372012GWAS1020988_Hblood protein measurement QTL GWAS1020988 (human)2e-70blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407375949GWAS1024925_Hblood protein measurement QTL GWAS1024925 (human)8e-75blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407372013GWAS1020989_Hblood protein measurement QTL GWAS1020989 (human)3e-36blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407371232GWAS1020208_Hblood protein measurement QTL GWAS1020208 (human)4e-40blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407383343GWAS1032319_Hblood protein measurement QTL GWAS1032319 (human)4e-87blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407384960GWAS1033936_Hblood protein measurement QTL GWAS1033936 (human)5e-60blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407364360GWAS1013336_Hblood protein measurement QTL GWAS1013336 (human)3e-55blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407367670GWAS1016646_Hblood protein measurement QTL GWAS1016646 (human)7e-125blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407381945GWAS1030921_Hblood protein measurement QTL GWAS1030921 (human)5e-71blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407382620GWAS1031596_Hblood protein measurement QTL GWAS1031596 (human)3e-41blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407378654GWAS1027630_Hblood protein measurement QTL GWAS1027630 (human)5e-72blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407381598GWAS1030574_Hblood protein measurement QTL GWAS1030574 (human)1e-74blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407378643GWAS1027619_Hblood protein measurement QTL GWAS1027619 (human)7e-74blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407366172GWAS1015148_Hblood protein measurement QTL GWAS1015148 (human)2e-58blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407373683GWAS1022659_Hblood protein measurement QTL GWAS1022659 (human)2e-52blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human
407385302GWAS1034278_Hblood protein measurement QTL GWAS1034278 (human)4e-30blood protein measurementblood protein measurement (CMO:0000028)155049382750493828Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1013336_H GCST90315781 RNF41/USP8 protein level ratio 43,509 European ancestry individuals ? NR 3E-55 54.523 rs16963739 0.344158 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1014326_H GCST90313569 CA13/USP8 protein level ratio 43,509 European ancestry individuals ? NR 5E-58 57.302 rs16963739 0.348639 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1015148_H GCST90315479 MPHOSPH8/USP8 protein level ratio 43,509 European ancestry individuals ? NR 2E-58 57.699 rs16963739 0.346825 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1016646_H GCST90315723 PPP1R2/USP8 protein level ratio 43,509 European ancestry individuals ? NR 7E-125 124.155 rs16963739 0.508041 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1017206_H GCST90315690 PLXNA4/USP8 protein level ratio 43,509 European ancestry individuals ? NR 7E-48 47.155 rs16963739 0.317053 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1020208_H GCST90313784 CD2AP/USP8 protein level ratio 43,509 European ancestry individuals ? NR 4E-40 39.398 rs16963739 0.289548 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1020988_H GCST90315892 STK11/USP8 protein level ratio 43,509 European ancestry individuals ? NR 2E-70 69.699 rs16963739 0.384224 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1020989_H GCST90315896 STX8/USP8 protein level ratio 43,509 European ancestry individuals ? NR 3E-36 35.523 rs16963739 0.274215 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1022659_H GCST90315005 GYS1/USP8 protein level ratio 43,509 European ancestry individuals ? NR 2E-52 51.699 rs16963739 0.329295 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1024925_H GCST90315070 HNRNPK/USP8 protein level ratio 43,509 European ancestry individuals ? NR 8E-75 74.097 rs16963739 0.396694 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1027619_H GCST90315944 USP8/WASF1 protein level ratio 43,509 European ancestry individuals ? NR 7E-74 73.155 rs16963739 0.391896 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1027630_H GCST90315920 TIA1/USP8 protein level ratio 43,509 European ancestry individuals ? NR 5E-72 71.302 rs16963739 0.391399 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1030574_H GCST90315223 ITGB1BP2/USP8 protein level ratio 43,509 European ancestry individuals ? NR 1E-74 74 rs16963739 0.388273 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1030921_H GCST90314022 CEP43/USP8 protein level ratio 43,509 European ancestry individuals ? NR 5E-71 70.302 rs16963739 0.387373 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1031596_H GCST90314060 CHMP1A/USP8 protein level ratio 43,509 European ancestry individuals ? NR 3E-41 40.523 rs16963739 0.292725 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1032319_H GCST90314879 FOXO1/USP8 protein level ratio 43,509 European ancestry individuals ? NR 4E-87 86.398 rs16963739 0.428828 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1033936_H GCST90314407 DARS1/USP8 protein level ratio 43,509 European ancestry individuals ? NR 5E-60 59.302 rs16963739 0.357702 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1034278_H GCST90313451 BAG6/USP8 protein level ratio 43,509 European ancestry individuals ? NR 4E-30 29.398 rs16963739 0.246224 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1035865_H GCST90315434 METAP2/USP8 protein level ratio 43,509 European ancestry individuals ? NR 2E-51 50.699 rs16963739 0.328304 blood protein measurement (EFO:0007937)
 PMID:38412862
Database Acc Id Source(s)
GWAS Catalog GCST90314022 GWAS Catalog

RGD Curation Notes
Note Type Note Reference