GWAS976776_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS976776_H (beverage consumption measurement QTL GWAS976776 (human)) Homo sapiens

Symbol: GWAS976776_H
Name: beverage consumption measurement QTL GWAS976776 (human)
RGD ID: 407327800
Trait: beverage consumption measurement
Measurement Type: drink intake measurement   (CMO:0000771)    
LOD Score: Not Available
P Value: 5.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38201,914,975 - 1,914,976RGD_MAPPER_PIPELINEGRCh38
GRCh37201,895,621 - 1,895,622RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS976776_HHumandrink intake measurement  IAGPrs112203261405850206Based on the EFO term IDGWAS_CATALOGPMID:32193382

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS976776_HHumanbeverage consumption measurement  IAGPrs112203261405850206 GWAS_CATALOGPMID:32193382
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736759SIRPAsignal regulatory protein alpha2018941671940592Human

Position Markers

Peak: (rs112203261)
Human AssemblyChrPosition (strand)Source
GRCh38201,914,975 - 1,914,976RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407327800GWAS976776_Hbeverage consumption measurement QTL GWAS976776 (human)5e-12beverage consumption measurementdrink intake measurement (CMO:0000771)2019149751914976Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS976776_H GCST90133002 Drink temperature 448,817 European ancestry individuals C 0.628984 5E-12 11.302 rs112203261 0.0151421 beverage consumption measurement (EFO:0010088)
 PMID:32193382
Database Acc Id Source(s)
GWAS Catalog GCST90133002 GWAS Catalog

RGD Curation Notes
Note Type Note Reference