GWAS957215_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS957215_H (C-reactive protein measurement QTL GWAS957215 (human)) Homo sapiens

Symbol: GWAS957215_H
Name: C-reactive protein measurement QTL GWAS957215 (human)
RGD ID: 407308239
Trait: C-reactive protein measurement
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,483,438 - 77,483,439RGD_MAPPER_PIPELINEGRCh38
GRCh37177,949,123 - 77,949,124RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS957215_HHumanblood C-reactive protein level  IAGPrs7515509405850206Based on the EFO term IDGWAS_CATALOGPMID:36376304

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS957215_HHumanC-reactive protein measurement  IAGPrs7515509405850206 GWAS_CATALOGPMID:36376304
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353587AK5adenylate kinase 517728201977559966Human

Position Markers

Peak: (rs7515509)
Human AssemblyChrPosition (strand)Source
GRCh38177,483,438 - 77,483,439RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
407308239GWAS957215_HC-reactive protein measurement QTL GWAS957215 (human)1e-09C-reactive protein measurementblood C-reactive protein level (CMO:0003160)17748343877483439Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS957215_H GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals A NR 1E-9 9 rs7515509 0.012611 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90179146 GWAS Catalog

RGD Curation Notes
Note Type Note Reference