GWAS927385_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS927385_H (body height QTL GWAS927385 (human)) Homo sapiens

Symbol: GWAS927385_H
Name: body height QTL GWAS927385 (human)
RGD ID: 407278409
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 3E-174
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,329,528 - 51,329,529RGD_MAPPER_PIPELINEGRCh38
GRCh371551,621,725 - 51,621,726RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS927385_HHumanbody height  IAGPrs2470144405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS927385_HHumanbody height  IAGPrs2470144405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS927385_HHumanbody height  IAGPrs2470144405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606587CYP19A1cytochrome P450 family 19 subfamily A member 1155120805751338596Human

Position Markers

Peak: (rs2470144)
Human AssemblyChrPosition (strand)Source
GRCh381551,329,528 - 51,329,529RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407187258GWAS836234_HSarcosine measurement QTL GWAS836234 (human)0.000005Sarcosine measurement155132952851329529Human
407278409GWAS927385_Hbody height QTL GWAS927385 (human)3e-174body height (VT:0001253)body height (CMO:0000106)155132952851329529Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS836234_H GCST90134152 Sarcosine levels in elite athletes 490 individuals ? NR 0.000005 5.302 rs2470144 0.28393695 Sarcosine measurement (EFO:0021668)
 PMID:31882771
GWAS927385_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals T 0.479 3E-174 173.523 rs2470144 0.0174 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference