GWAS891705_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS891705_H (lipid measurement, intermediate density lipoprotein measurement QTL GWAS891705 (human)) Homo sapiens

Symbol: GWAS891705_H
Name: lipid measurement, intermediate density lipoprotein measurement QTL GWAS891705 (human)
RGD ID: 407242729
Trait: lipid measurement, intermediate density lipoprotein measurement
Measurement Type: blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
blood lipid measurement   (CMO:0000050)    
LOD Score: Not Available
P Value: 6.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38155,060,755 - 55,060,756RGD_MAPPER_PIPELINEGRCh38
GRCh37155,526,428 - 55,526,429RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS891705_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs11206517405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS891705_HHumanblood lipid measurement  IAGPrs11206517405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS891705_HHumanintermediate density lipoprotein measurement  IAGPrs11206517405850206 GWAS_CATALOGPMID:35213538
GWAS891705_HHumanlipid measurement  IAGPrs11206517405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731023PCSK9proprotein convertase subtilisin/kexin type 915503954855064852Human

Position Markers

Peak: (rs11206517)
Human AssemblyChrPosition (strand)Source
GRCh38155,060,755 - 55,060,756RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407309894GWAS958870_Hlow density lipoprotein cholesterol measurement QTL GWAS958870 (human)1e-17low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407240397GWAS889373_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS889373 (human)2e-17phospholipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)15506075555060756Human
406925258GWAS574234_Hsleep duration, low density lipoprotein cholesterol measurement QTL GWAS574234 (human)1e-16blood lipid amount (VT:0003949)blood intermediate density lipoprotein cholesterol level (CMO:0001562)15506075555060756Human
407041481GWAS690457_Hcholesteryl ester measurement QTL GWAS690457 (human)3e-14blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407031886GWAS680862_Hfree cholesterol measurement QTL GWAS680862 (human)3e-10free cholesterol measurementblood cholesterol level (CMO:0002280)15506075555060756Human
407113289GWAS762265_Hapolipoprotein B measurement QTL GWAS762265 (human)7e-12very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407030092GWAS679068_Hcholesteryl ester measurement QTL GWAS679068 (human)2e-11blood lipid amount (VT:0003949)blood lipid measurement (CMO:0000050)15506075555060756Human
407029452GWAS678428_Hlow density lipoprotein cholesterol measurement QTL GWAS678428 (human)9e-12very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407032013GWAS680989_Hlow density lipoprotein cholesterol measurement QTL GWAS680989 (human)8e-13low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407035859GWAS684835_Hfree cholesterol in small LDL measurement QTL GWAS684835 (human)6e-13free cholesterol in small LDL measurement 15506075555060756Human
407036752GWAS685728_Hfree cholesterol in small VLDL measurement QTL GWAS685728 (human)9e-11cholesterol in medium LDL measurement blood low density lipoprotein phospholipid level (CMO:0001568)15506075555060756Human
407038416GWAS687392_Hcholesterol in medium VLDL measurement QTL GWAS687392 (human)9e-13cholesterol in medium VLDL measurement 15506075555060756Human
407030992GWAS679968_Hcholesterol in very small VLDL measurement QTL GWAS679968 (human)6e-11total lipids in small LDL15506075555060756Human
407036759GWAS685735_Hcholesteryl ester measurement QTL GWAS685735 (human)4e-10blood lipid amount (VT:0003949)15506075555060756Human
407333329GWAS982305_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS982305 (human)1e-10very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407031256GWAS680232_Htotal lipids in IDL QTL GWAS680232 (human)6e-12total lipids in IDL15506075555060756Human
407325661GWAS974637_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS974637 (human)7e-13total cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407333595GWAS982571_Hfree cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS982571 (human)5e-13free cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407215321GWAS864297_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS864297 (human)2e-16apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)15506075555060756Human
407316056GWAS965032_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS965032 (human)4e-14blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407039205GWAS688181_Hcholesterol in large LDL measurement QTL GWAS688181 (human)8e-12blood lipid amount (VT:0003949)15506075555060756Human
407038309GWAS687285_Htotal cholesterol measurement QTL GWAS687285 (human)8e-10total cholesterol measurementblood total cholesterol level (CMO:0000051)15506075555060756Human
407041381GWAS690357_Htotal lipids in medium LDL QTL GWAS690357 (human)2e-10very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407038565GWAS687541_Hlow density lipoprotein cholesterol measurement QTL GWAS687541 (human)8e-11very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407324015GWAS972991_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS972991 (human)8e-15total cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407311595GWAS960571_Hfree cholesterol measurement QTL GWAS960571 (human)4e-15free cholesterol measurementblood cholesterol level (CMO:0002280)15506075555060756Human
407242729GWAS891705_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS891705 (human)6e-17lipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)15506075555060756Human
407030513GWAS679489_Hcholesteryl ester measurement QTL GWAS679489 (human)4e-11blood lipid amount (VT:0003949)15506075555060756Human
407260533GWAS909509_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS909509 (human)2e-13blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407188720GWAS837696_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS837696 (human)7e-17total cholesterol measurement, intermediate density lipoprotein measurementblood total cholesterol level (CMO:0000051)15506075555060756Human
407109874GWAS758850_Hphospholipids in LDL measurement QTL GWAS758850 (human)5e-12cholesterol in IDL measurement 15506075555060756Human
406918009GWAS566985_Hlow density lipoprotein cholesterol measurement QTL GWAS566985 (human)6e-32low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407034490GWAS683466_Hcholesteryl ester measurement QTL GWAS683466 (human)9e-10blood lipid amount (VT:0003949)15506075555060756Human
407307772GWAS956748_Hlow density lipoprotein cholesterol measurement QTL GWAS956748 (human)9e-17low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407192313GWAS841289_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS841289 (human)4e-17low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407257338GWAS906314_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS906314 (human)3e-15blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407190008GWAS838984_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS838984 (human)5e-16blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
406929150GWAS578126_Hapolipoprotein B measurement QTL GWAS578126 (human)2e-32apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)15506075555060756Human
407258119GWAS907095_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS907095 (human)7e-15total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407033217GWAS682193_Hfree cholesterol in LDL measurement QTL GWAS682193 (human)1e-12blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407036550GWAS685526_Htotal cholesterol measurement QTL GWAS685526 (human)1e-11blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407326848GWAS975824_Hlipid measurement, lipoprotein measurement QTL GWAS975824 (human)1e-09lipid measurement, lipoprotein measurementblood lipoprotein measurement (CMO:0002690)15506075555060756Human
407194381GWAS843357_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS843357 (human)5e-17free cholesterol measurement, low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)15506075555060756Human
407328015GWAS976991_Hlow density lipoprotein cholesterol measurement QTL GWAS976991 (human)9e-14low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407033486GWAS682462_Hlow density lipoprotein cholesterol measurement QTL GWAS682462 (human)4e-12free cholesterol in IDL measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)15506075555060756Human
407029774GWAS678750_Hintermediate density lipoprotein measurement QTL GWAS678750 (human)2e-12phospholipids in IDL measurementblood intermediate density lipoprotein phospholipid level (CMO:0001574)15506075555060756Human
407314570GWAS963546_Hfree cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS963546 (human)9e-15free cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
407317911GWAS966887_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS966887 (human)7e-16total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407037208GWAS686184_Hlow density lipoprotein cholesterol measurement QTL GWAS686184 (human)5e-10low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)15506075555060756Human
407254298GWAS903274_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS903274 (human)1e-14total cholesterol measurementblood total cholesterol level (CMO:0000051)15506075555060756Human
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human
407292836GWAS941812_Hvery low density lipoprotein cholesterol measurement QTL GWAS941812 (human)1e-08very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)15506075555060756Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
407326126GWAS975102_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS975102 (human)1e-15low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)15506075555060756Human
407255853GWAS904829_Homega-6 polyunsaturated fatty acid measurement QTL GWAS904829 (human)3e-08linoleic acid measurementblood free fatty acids level (CMO:0000117)15506075555060756Human
407034798GWAS683774_Hfree cholesterol in medium LDL measurement QTL GWAS683774 (human)3e-12very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)15506075555060756Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
407041968GWAS690944_Hfree cholesterol in medium VLDL measurement QTL GWAS690944 (human)6e-10free cholesterol in medium VLDL measurement 15506075555060756Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS566985_H GCST010245 LDL cholesterol levels 440,546 European ancestry individuals T 0.96685 6E-32 31.222 rs11206517 0.0683407 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32203549
GWAS574234_H GCST009365 LDL cholesterol levels x short total sleep time interaction (2df test) 2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls ? NR 1E-16 16 rs11206517 3.169 sleep duration (EFO:0005271)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:31719535
GWAS578126_H GCST010243 Apolipoprotein B levels 439,214 European ancestry individuals T 0.96683 2E-32 31.699 rs11206517 0.0685214 apolipoprotein B measurement (EFO:0004615)
 PMID:32203549
GWAS678428_H GCST90269502 LDL cholesterol levels (UKB data field 23405) 88,329 European ancestry individuals G 0.0329311 9E-12 11.046 rs11206517 0.0901373 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
GWAS678750_H GCST90269620 Concentration of IDL particles (UKB data field 23523) 88,329 European ancestry individuals G 0.0329311 2E-12 11.699 rs11206517 0.0920811 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:36764567
GWAS679068_H GCST90269617 Cholesteryl esters in very small VLDL (UKB data field 23520) 88,329 European ancestry individuals G 0.0329311 2E-11 10.699 rs11206517 0.0854958 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS679489_H GCST90269514 Cholesteryl esters in LDL (UKB data field 23417) 88,329 European ancestry individuals G 0.0329311 4E-11 10.398 rs11206517 0.0874761 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS679968_H GCST90269616 Cholesterol in very small VLDL (UKB data field 23519) 88,329 European ancestry individuals G 0.0329311 6E-11 10.222 rs11206517 0.0842128 cholesterol in very small VLDL measurement (EFO:0022231)
 PMID:36764567
GWAS680232_H GCST90269621 Total lipids in IDL (UKB data field 23524) 88,329 European ancestry individuals G 0.0329311 6E-12 11.222 rs11206517 0.0883663 total lipids in IDL (EFO:0022161)
 PMID:36764567
GWAS680862_H GCST90269516 Total free cholesterol levels (UKB data field 23419) 88,329 European ancestry individuals G 0.0329311 3E-10 9.523 rs11206517 0.081943 free cholesterol measurement (EFO:0008591)
 PMID:36764567
GWAS680989_H GCST90269501 Clinical LDL cholesterol levels (UKB data field 23404) 88,329 European ancestry individuals G 0.0329311 8E-13 12.097 rs11206517 0.0944972 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
GWAS682193_H GCST90269518 Free cholesterol in LDL (UKB data field 23421) 88,329 European ancestry individuals G 0.0329311 1E-12 12 rs11206517 0.0938511 free cholesterol in LDL measurement (EFO:0022266)
 PMID:36764567
GWAS682462_H GCST90269526 Concentration of LDL particles (UKB data field 23429) 88,329 European ancestry individuals G 0.0329311 4E-12 11.398 rs11206517 0.0918391 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269642 Total lipids in small LDL (UKB data field 23545) 88,329 European ancestry individuals G 0.0329311 6E-11 10.222 rs11206517 0.0869478 total lipids in small LDL (EFO:0022168)
 PMID:36764567
GWAS683466_H GCST90269638 Cholesteryl esters in medium LDL (UKB data field 23541) 88,329 European ancestry individuals G 0.0329311 9E-10 9.046 rs11206517 0.0815013 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS683774_H GCST90269639 Free cholesterol in medium LDL (UKB data field 23542) 88,329 European ancestry individuals G 0.0329311 3E-12 11.523 rs11206517 0.0925875 free cholesterol in medium LDL measurement (EFO:0022268)
 PMID:36764567
GWAS684835_H GCST90269646 Free cholesterol in small LDL (UKB data field 23549) 88,329 European ancestry individuals G 0.0329311 6E-13 12.222 rs11206517 0.0955474 free cholesterol in small LDL measurement (EFO:0022271)
 PMID:36764567
GWAS685526_H GCST90269498 Total cholesterol minus HDL-C levels (UKB data field 23401) 88,329 European ancestry individuals G 0.0329311 1E-11 11 rs11206517 0.0895929 total cholesterol measurement (EFO:0004574)
 PMID:36764567
GWAS685728_H GCST90269611 Free cholesterol in small VLDL (UKB data field 23514) 88,329 European ancestry individuals G 0.0329311 9E-11 10.046 rs11206517 0.0860016 free cholesterol in small VLDL measurement (EFO:0022272)
 PMID:36764567
GWAS685735_H GCST90269645 Cholesteryl esters in small LDL (UKB data field 23548) 88,329 European ancestry individuals G 0.0329311 4E-10 9.398 rs11206517 0.0828656 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS686184_H GCST90269641 Concentration of small LDL particles (UKB data field 23544) 88,329 European ancestry individuals G 0.0329311 5E-10 9.302 rs11206517 0.0824184 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269643 Phospholipids in small LDL (UKB data field 23546) 88,329 European ancestry individuals G 0.0329311 9E-12 11.046 rs11206517 0.0902935 phospholipids in small LDL measurement (EFO:0022297)
 PMID:36764567
None Available GCST90269644 Cholesterol in small LDL (UKB data field 23547) 88,329 European ancestry individuals G 0.0329311 2E-11 10.699 rs11206517 0.0892041 cholesterol in small LDL measurement (EFO:0022227)
 PMID:36764567
None Available GCST90269499 Remnant cholesterol (non-HDL, non-LDL -cholesterol) levels (UKB data field 23402) 88,329 European ancestry individuals G 0.0329311 6E-11 10.222 rs11206517 0.0861553 remnant cholesterol measurement (EFO:0010815)
 PMID:36764567
GWAS687285_H GCST90269497 Total cholesterol levels (UKB data field 23400) 88,329 European ancestry individuals G 0.0329311 8E-10 9.097 rs11206517 0.0790935 total cholesterol measurement (EFO:0004574)
 PMID:36764567
GWAS687392_H GCST90269602 Cholesterol in medium VLDL (UKB data field 23505) 88,329 European ancestry individuals G 0.0329311 9E-13 12.046 rs11206517 0.0945261 cholesterol in medium VLDL measurement (EFO:0022225)
 PMID:36764567
GWAS687541_H GCST90269634 Concentration of medium LDL particles (UKB data field 23537) 88,329 European ancestry individuals G 0.0329311 8E-11 10.097 rs11206517 0.0865997 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269632 Free cholesterol in large LDL (UKB data field 23535) 88,329 European ancestry individuals G 0.0329311 1E-12 12 rs11206517 0.0924341 free cholesterol in large LDL measurement (EFO:0022176)
 PMID:36764567
None Available GCST90269522 Total lipids in LDL (UKB data field 23425) 88,329 European ancestry individuals G 0.0329311 2E-11 10.699 rs11206517 0.0887973 total lipids in LDL measurement (EFO:0022308)
 PMID:36764567
None Available GCST90269631 Cholesteryl esters in large LDL (UKB data field 23534) 88,329 European ancestry individuals G 0.0329311 2E-11 10.699 rs11206517 0.0879495 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269637 Cholesterol in medium LDL (UKB data field 23540) 88,329 European ancestry individuals G 0.0329311 9E-11 10.046 rs11206517 0.0860871 cholesterol in medium LDL measurement (EFO:0022224)
 PMID:36764567
GWAS688181_H GCST90269630 Cholesterol in large LDL (UKB data field 23533) 88,329 European ancestry individuals G 0.0329311 8E-12 11.097 rs11206517 0.0897947 cholesterol in large LDL measurement (EFO:0021901)
 PMID:36764567
None Available GCST90269636 Phospholipids in medium LDL (UKB data field 23539) 88,329 European ancestry individuals G 0.0329311 9E-11 10.046 rs11206517 0.0860799 phospholipids in medium LDL measurement (EFO:0022183)
 PMID:36764567
None Available GCST90269628 Total lipids in large LDL (UKB data field 23531) 88,329 European ancestry individuals G 0.0329311 1E-11 11 rs11206517 0.0891394 total lipids in large LDL (EFO:0022163)
 PMID:36764567
GWAS690357_H GCST90269635 Total lipids in medium LDL (UKB data field 23538) 88,329 European ancestry individuals G 0.0329311 2E-10 9.699 rs11206517 0.0841838 total lipids in medium LDL (EFO:0022180)
 PMID:36764567
GWAS690457_H GCST90269603 Cholesteryl esters in medium VLDL (UKB data field 23506) 88,329 European ancestry individuals G 0.0329311 3E-14 13.523 rs11206517 0.0998178 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269627 Concentration of large LDL particles (UKB data field 23530) 88,329 European ancestry individuals G 0.0329311 3E-12 11.523 rs11206517 0.0923134 concentration of large LDL particles measurement (EFO:0022160)
 PMID:36764567
GWAS690944_H GCST90269604 Free cholesterol in medium VLDL (UKB data field 23507) 88,329 European ancestry individuals G 0.0329311 6E-10 9.222 rs11206517 0.0819773 free cholesterol in medium VLDL measurement (EFO:0022269)
 PMID:36764567
None Available GCST90269629 Phospholipids in large LDL (UKB data field 23532) 88,329 European ancestry individuals G 0.0329311 3E-12 11.523 rs11206517 0.0919317 phospholipids in large LDL measurement (EFO:0022174)
 PMID:36764567
None Available GCST90269697 Cholesterol to total lipids in small VLDL percentage (UKB data field 23600) 88,329 European ancestry individuals G 0.0329311 9E-10 9.046 rs11206517 0.0795066 cholesterol to total lipids in small VLDL percentage (EFO:0022242)
 PMID:36764567
None Available GCST90269698 Cholesteryl esters to total lipids in small VLDL percentage (UKB data field 23601) 88,329 European ancestry individuals G 0.0329311 9E-10 9.046 rs11206517 0.0805786 cholesteryl esters to total lipids in small VLDL percentage (EFO:0022256)
 PMID:36764567
GWAS758850_H GCST90269510 Phospholipids in LDL (UKB data field 23413) 88,329 European ancestry individuals G 0.0329311 5E-12 11.302 rs11206517 0.0916568 phospholipids in LDL measurement (EFO:0022294)
 PMID:36764567
None Available GCST90269538 Apolipoprotein B to apolipoprotein A1 ratio (UKB data field 23441) 88,329 European ancestry individuals G 0.0329311 2E-10 9.699 rs11206517 0.0828396 apolipoprotein B to apolipoprotein A1 ratio (EFO:0021897)
 PMID:36764567
GWAS762265_H GCST90269536 Apolipoprotein B levels (UKB data field 23439) 88,329 European ancestry individuals G 0.0329311 7E-12 11.155 rs11206517 0.0910304 apolipoprotein B measurement (EFO:0004615)
 PMID:36764567
None Available GCST90269625 Free cholesterol in IDL (UKB data field 23528) 88,329 European ancestry individuals G 0.0329311 4E-12 11.398 rs11206517 0.0894846 free cholesterol in IDL measurement (EFO:0022181)
 PMID:36764567
None Available GCST90269624 Cholesteryl esters in IDL (UKB data field 23527) 88,329 European ancestry individuals G 0.0329311 8E-12 11.097 rs11206517 0.0879016 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269623 Cholesterol in IDL (UKB data field 23526) 88,329 European ancestry individuals G 0.0329311 5E-12 11.302 rs11206517 0.0888247 cholesterol in IDL measurement (EFO:0021899)
 PMID:36764567
None Available GCST90269622 Phospholipids in IDL (UKB data field 23525) 88,329 European ancestry individuals G 0.0329311 2E-12 11.699 rs11206517 0.0902112 phospholipids in IDL measurement (EFO:0022164)
 PMID:36764567
GWAS837696_H GCST90092862 Total lipid levels in large LDL 115,082 European ancestry individuals T 0.966988 7E-17 16.155 rs11206517 0.0954747 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS838984_H GCST90092884 Cholesteryl ester levels in LDL 115,082 European ancestry individuals T 0.966988 5E-16 15.302 rs11206517 0.0934481 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS841289_H GCST90092864 Phospholipid levels in large LDL 115,082 European ancestry individuals T 0.966988 4E-17 16.398 rs11206517 0.0966583 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092858 Cholesteryl ester levels in large LDL 115,082 European ancestry individuals T 0.966988 1E-16 16 rs11206517 0.0948246 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS843357_H GCST90092856 Cholesterol levels in large LDL 115,082 European ancestry individuals T 0.966988 5E-17 16.302 rs11206517 0.0959847 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092888 Phospholipid levels in LDL 115,082 European ancestry individuals T 0.966988 5E-17 16.302 rs11206517 0.0968261 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS864297_H GCST90092886 Total lipid levels in LDL 115,082 European ancestry individuals T 0.966988 2E-16 15.699 rs11206517 0.0947667 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals T 0.966988 1E-16 16 rs11206517 0.0959294 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals T 0.966988 7E-17 16.155 rs11206517 0.0955242 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS889373_H GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals T 0.966988 2E-17 16.699 rs11206517 0.0947171 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS891705_H GCST90092837 Total lipid levels in IDL 115,082 European ancestry individuals T 0.966988 6E-17 16.222 rs11206517 0.093435 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092930 Total cholesterol minus HDL-C levels 115,082 European ancestry individuals T 0.966988 2E-16 15.699 rs11206517 0.0948412 total cholesterol measurement (EFO:0004574)
 PMID:35213538
GWAS903274_H GCST90092910 Total lipid levels in medium LDL 115,082 European ancestry individuals T 0.966988 1E-14 14 rs11206517 0.0890877 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092908 Free cholesterol levels in medium LDL 115,082 European ancestry individuals T 0.966988 5E-17 16.302 rs11206517 0.0968757 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS904829_H GCST90092933 Omega-6 fatty acid levels 115,006 European ancestry individuals T 0.966984 3E-8 7.523 rs11206517 0.062322 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:35213538
GWAS906314_H GCST90092912 Phospholipid levels in medium LDL 115,082 European ancestry individuals T 0.966988 3E-15 14.523 rs11206517 0.0915262 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS907095_H GCST90092904 Cholesterol levels in medium LDL 115,082 European ancestry individuals T 0.966988 7E-15 14.155 rs11206517 0.0901972 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS909509_H GCST90092906 Cholesteryl ester levels in medium LDL 115,082 European ancestry individuals T 0.966988 2E-13 12.699 rs11206517 0.0853433 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092831 Cholesterol levels in IDL 115,082 European ancestry individuals T 0.966988 7E-17 16.155 rs11206517 0.0931447 total cholesterol measurement (EFO:0004574)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092833 Cholesteryl ester levels in IDL 115,082 European ancestry individuals T 0.966988 1E-16 16 rs11206517 0.0925881 cholesteryl ester measurement (EFO:0010351)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092923 Concentration of medium VLDL particles 115,082 European ancestry individuals T 0.966988 8E-11 10.097 rs11206517 0.0748522 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092911 Concentration of medium LDL particles 115,082 European ancestry individuals T 0.966988 3E-14 13.523 rs11206517 0.0880676 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092924 Phospholipid levels in medium VLDL 115,082 European ancestry individuals T 0.966988 9E-12 11.046 rs11206517 0.0786132 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS941812_H GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals T 0.966988 1E-8 8 rs11206517 0.0650274 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092920 Free cholesterol levels in medium VLDL 115,082 European ancestry individuals T 0.966988 2E-13 12.699 rs11206517 0.0853178 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092922 Total lipid levels in medium VLDL 115,082 European ancestry individuals T 0.966988 1E-8 8 rs11206517 0.0655556 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092997 Cholesteryl ester levels in VLDL 115,082 European ancestry individuals T 0.966988 1E-12 12 rs11206517 0.0820564 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS956748_H GCST90092883 LDL cholesterol levels 115,082 European ancestry individuals T 0.966988 9E-17 16.046 rs11206517 0.0956948 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092880 Linoleic acid levels 115,006 European ancestry individuals T 0.966984 3E-8 7.523 rs11206517 0.0629244 linoleic acid measurement (EFO:0006807)
 PMID:35213538
None Available GCST90092985 Total cholesterol levels 115,082 European ancestry individuals T 0.966988 1E-14 14 rs11206517 0.0861967 total cholesterol measurement (EFO:0004574)
 PMID:35213538
None Available GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals T 0.966988 2E-16 15.699 rs11206517 0.0952718 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS958870_H GCST90092814 Clinical LDL cholesterol levels 115,082 European ancestry individuals T 0.966988 1E-17 17 rs11206517 0.0984287 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS960571_H GCST90092988 Total free cholesterol levels 115,082 European ancestry individuals T 0.966988 4E-15 14.398 rs11206517 0.0886286 free cholesterol measurement (EFO:0008591)
 PMID:35213538
None Available GCST90092986 Total esterified cholesterol levels 115,082 European ancestry individuals T 0.966988 3E-14 13.523 rs11206517 0.0845389 esterified cholesterol measurement (EFO:0008589)
 PMID:35213538
GWAS963546_H GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals T 0.966988 9E-15 14.046 rs11206517 0.0894919 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS965032_H GCST90092958 Cholesteryl ester levels in small LDL 115,082 European ancestry individuals T 0.966988 4E-14 13.398 rs11206517 0.0873361 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals T 0.966988 1E-11 11 rs11206517 0.078012 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS966887_H GCST90092956 Cholesterol levels in small LDL 115,082 European ancestry individuals T 0.966988 7E-16 15.155 rs11206517 0.0933702 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092943 Remnant cholesterol (non-HDL, non-LDL -cholesterol) 115,082 European ancestry individuals T 0.966988 3E-15 14.523 rs11206517 0.0908334 remnant cholesterol measurement (EFO:0010815)
 PMID:35213538
None Available GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals T 0.966988 7E-12 11.155 rs11206517 0.0790456 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS972991_H GCST90093028 Cholesterol levels in very small VLDL 115,082 European ancestry individuals T 0.966988 8E-15 14.097 rs11206517 0.0870388 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS974637_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals T 0.966988 7E-13 12.155 rs11206517 0.0828308 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS975102_H GCST90092962 Total lipid levels in small LDL 115,082 European ancestry individuals T 0.966988 1E-15 15 rs11206517 0.0922566 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS975824_H GCST90092989 Total lipid levels in lipoprotein particles 115,082 European ancestry individuals T 0.966988 1E-9 9 rs11206517 0.0689677 lipid measurement (EFO:0004529)
lipoprotein measurement (EFO:0004732)
 PMID:35213538
GWAS976991_H GCST90092963 Concentration of small LDL particles 115,082 European ancestry individuals T 0.966988 9E-14 13.046 rs11206517 0.086182 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092996 VLDL cholesterol levels 115,082 European ancestry individuals T 0.966988 2E-10 9.699 rs11206517 0.0736612 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals T 0.966988 3E-15 14.523 rs11206517 0.0879939 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS982305_H GCST90093036 Phospholipid levels in very small VLDL 115,082 European ancestry individuals T 0.966988 1E-10 10 rs11206517 0.0731175 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS982571_H GCST90093032 Free cholesterol levels in very small VLDL 115,082 European ancestry individuals T 0.966988 5E-13 12.302 rs11206517 0.081761 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals T 0.966988 3E-12 11.523 rs11206517 0.079274 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093034 Total lipid levels in very small VLDL 115,082 European ancestry individuals T 0.966988 2E-11 10.699 rs11206517 0.0758481 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092837 GWAS Catalog

RGD Curation Notes
Note Type Note Reference