GWAS861806_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS861806_H (body mass index QTL GWAS861806 (human)) Homo sapiens

Symbol: GWAS861806_H
Name: body mass index QTL GWAS861806 (human)
RGD ID: 407212830
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 5.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,192,659 - 11,192,660RGD_MAPPER_PIPELINEGRCh38
GRCh37111,252,716 - 11,252,717RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS861806_HHumanbody mass index (BMI)  IAGPrs1205593405850206Based on the EFO term IDGWAS_CATALOGPMID:31669095

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS861806_HHumanbody mass index  IAGPrs1205593405850206 GWAS_CATALOGPMID:31669095
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68533MTORmechanistic target of rapamycin kinase11110653511262551Human
1350833ANGPTL7angiopoietin like 711118935511195981Human

Position Markers

Peak: (rs1205593)
Human AssemblyChrPosition (strand)Source
GRCh38111,192,659 - 11,192,660RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407212830GWAS861806_Hbody mass index QTL GWAS861806 (human)5e-11body mass indexbody mass index (BMI) (CMO:0000105)11119265911192660Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS861806_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 5E-11 10.302 rs1205593 N/A body mass index (EFO:0004340)
 PMID:31669095
Database Acc Id Source(s)
GWAS Catalog GCST009871 GWAS Catalog

RGD Curation Notes
Note Type Note Reference