GWAS813260_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS813260_H (eosinophil measurement QTL GWAS813260 (human)) Homo sapiens

Symbol: GWAS813260_H
Name: eosinophil measurement QTL GWAS813260 (human)
RGD ID: 407164284
Trait: eosinophil measurement
LOD Score: Not Available
P Value: 8.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38629,944,717 - 29,944,718RGD_MAPPER_PIPELINEGRCh38
GRCh37629,912,494 - 29,912,495RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS813260_HHumaneosinophil measurement  IAGPrs2975059405850206 GWAS_CATALOGPMID:37596262
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349444HLA-Amajor histocompatibility complex, class I, A62994253229945870Human
151673698LOC124901298uncharacterized LOC12490129862992819829945593Human

Position Markers

Peak: (rs2975059)
Human AssemblyChrPosition (strand)Source
GRCh38629,944,717 - 29,944,718RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
407164284GWAS813260_Heosinophil measurement QTL GWAS813260 (human)8e-10eosinophil measurement62994471729944718Human
407066219GWAS715195_Heosinophil count QTL GWAS715195 (human)3e-55eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)62994471729944718Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
406964956GWAS613932_Heosinophil count QTL GWAS613932 (human)2e-74eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)62994471729944718Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS613932_H GCST90002381 Eosinophil counts 408,112 British individuals C 0.327132 2E-74 73.699 rs2975059 0.04847726 eosinophil count (EFO:0004842)
 PMID:32888494
GWAS715195_H GCST90056180 Eosinophil counts 234,763 European ancestry individuals T 0.673 3E-55 54.523 rs2975059 N/A eosinophil count (EFO:0004842)
 PMID:34469753
GWAS813260_H GCST90281235 Eosinophil forward scatter distribution width 29,084 European ancestry individuals C 0.4153 8E-10 9.097 rs2975059 0.0546191 eosinophil measurement (EFO:0803540)
 PMID:37596262
Database Acc Id Source(s)
GWAS Catalog GCST90281235 GWAS Catalog

RGD Curation Notes
Note Type Note Reference