GWAS760931_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS760931_H (waist-hip ratio QTL GWAS760931 (human)) Homo sapiens

Symbol: GWAS760931_H
Name: waist-hip ratio QTL GWAS760931 (human)
RGD ID: 407111955
Trait: waist-hip ratio
Measurement Type: waist to hip ratio (WHR)   (CMO:0000020)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,132,301 - 22,132,302RGD_MAPPER_PIPELINEGRCh38
GRCh37122,458,794 - 22,458,795RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760931_HHumanwaist to hip ratio (WHR)  IAGPrs12404660405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760931_HHumanwaist-hip ratio  IAGPrs12404660405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733867WNT4Wnt family member 412211731322143097Human
155635745LOC127268026H3K4me1 hESC enhancer GRCh37_chr1:22458585-2245934312213209222132850Human

Position Markers

Peak: (rs12404660)
Human AssemblyChrPosition (strand)Source
GRCh38122,132,301 - 22,132,302RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407111955GWAS760931_Hwaist-hip ratio QTL GWAS760931 (human)2e-13waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)12213230122132302Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS760931_H GCST007067 Waist-hip ratio approximately 458,000 European ancestry individuals ? NR 2E-13 12.699 rs12404660 N/A waist-hip ratio (EFO:0004343)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST007067 GWAS Catalog

RGD Curation Notes
Note Type Note Reference