GWAS760472_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS760472_H (lipid measurement, high density lipoprotein cholesterol measurement QTL GWAS760472 (human)) Homo sapiens

Symbol: GWAS760472_H
Name: lipid measurement, high density lipoprotein cholesterol measurement QTL GWAS760472 (human)
RGD ID: 407111496
Trait: lipid measurement, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
blood lipid measurement   (CMO:0000050)    
LOD Score: Not Available
P Value: 7.0E-35
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,387,985 - 58,387,986RGD_MAPPER_PIPELINEGRCh38
GRCh371558,680,184 - 58,680,185RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760472_HHumanblood high density lipoprotein cholesterol level  IAGPrs7177289405850206Based on the EFO term IDGWAS_CATALOGPMID:34610981
GWAS760472_HHumanblood lipid measurement  IAGPrs7177289405850206Based on the EFO term IDGWAS_CATALOGPMID:34610981

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760472_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs7177289405850206 GWAS_CATALOGPMID:34610981
GWAS760472_HHumanlipid measurement  IAGPrs7177289405850206 GWAS_CATALOGPMID:34610981
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7177289)
Human AssemblyChrPosition (strand)Source
GRCh381558,387,985 - 58,387,986RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597459612GWAS1555686_Hlow density lipoprotein cholesterol measurement QTL GWAS1555686 (human)4e-45low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407111495GWAS760471_Hhigh density lipoprotein cholesterol measurement QTL GWAS760471 (human)2e-31high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451419GWAS1547493_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547493 (human)8e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597516437GWAS1612511_Htriglycerides to total lipids in small HDL percentage QTL GWAS1612511 (human)3e-90blood HDL triglyceride amount (VT:0010698)155838798558387986Human
597438100GWAS1534174_Hvery low density lipoprotein cholesterol measurement, cholesterol:total lipids ratio QTL GWAS1534174 (human)3e-34very low density lipoprotein cholesterol measurement, cholesterol:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)155838798558387986Human
597486743GWAS1582817_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1582817 (human)7e-27total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407111496GWAS760472_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS760472 (human)7e-35lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596970136GWAS1089655_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089655 (human)8e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407111510GWAS760486_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS760486 (human)5e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969607GWAS1089126_Hapolipoprotein A 1 measurement QTL GWAS1089126 (human)1e-19apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155838798558387986Human
407116368GWAS765344_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS765344 (human)3e-10polyunsaturated fatty acids to total fatty acids percentage blood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597437829GWAS1533903_Hvery low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS1533903 (human)3e-29phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407112031GWAS761007_Hapolipoprotein A 1 measurement QTL GWAS761007 (human)1e-19apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155838798558387986Human
407111513GWAS760489_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS760489 (human)4e-33free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597453441GWAS1549515_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1549515 (human)5e-08free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597453442GWAS1549516_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1549516 (human)6e-10phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597516674GWAS1612748_Htriglycerides in small HDL measurement QTL GWAS1612748 (human)6e-63triglycerides in small HDL measurementblood high density lipoprotein triglyceride level (CMO:0002686)155838798558387986Human
597454211GWAS1550285_Hserum gamma-glutamyl transferase measurement QTL GWAS1550285 (human)5e-12serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)155838798558387986Human
597515446GWAS1611520_Hmonounsaturated fatty acids; 16:1, 18:1 measurement QTL GWAS1611520 (human)5e-51monounsaturated fatty acids; 16:1, 18:1 measurement155838798558387986Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597451182GWAS1547256_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547256 (human)2e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451177GWAS1547251_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547251 (human)6e-16total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451179GWAS1547253_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547253 (human)8e-31total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451172GWAS1547246_Hapolipoprotein A 1 measurement QTL GWAS1547246 (human)1e-19apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155838798558387986Human
597452196GWAS1548270_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1548270 (human)4e-31lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597452197GWAS1548271_Hhigh density lipoprotein cholesterol measurement QTL GWAS1548271 (human)8e-32high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969898GWAS1089417_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089417 (human)6e-16total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969425GWAS1088944_Hcholine measurement, phosphatidylcholine measurement QTL GWAS1088944 (human)2e-22choline measurement, phosphatidylcholine measurement155838798558387986Human
596970195GWAS1089714_Hhigh density lipoprotein cholesterol measurement QTL GWAS1089714 (human)8e-32high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597453524GWAS1549598_Hcholine measurement, phosphatidylcholine measurement QTL GWAS1549598 (human)2e-22choline measurement, phosphatidylcholine measurement155838798558387986Human
407115534GWAS764510_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS764510 (human)5e-08free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969951GWAS1089470_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089470 (human)8e-31total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407115535GWAS764511_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS764511 (human)6e-10phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597459927GWAS1556001_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1556001 (human)9e-38low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)155838798558387986Human
597438167GWAS1534241_Htriglycerides:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS1534241 (human)4e-162triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
597486803GWAS1582877_Hvery low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS1582877 (human)1e-42very low density lipoprotein cholesterol measurement, esterified cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)155838798558387986Human
407106323GWAS755299_Hhigh density lipoprotein cholesterol measurement QTL GWAS755299 (human)3e-29very low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)155838798558387986Human
597453518GWAS1549592_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1549592 (human)3e-10fatty acid amount (VT:0010046)blood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407106327GWAS755303_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS755303 (human)8e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407106330GWAS755306_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS755306 (human)1e-27free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596970191GWAS1089710_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1089710 (human)4e-31lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597513926GWAS1610000_Hfree cholesterol to total lipids in medium LDL percentage QTL GWAS1610000 (human)7e-38blood LDL cholesterol amount (VT:0000181)155838798558387986Human
596970186GWAS1089705_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089705 (human)1e-27free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597456323GWAS1552397_Hcholesterol esters in medium LDL measurement QTL GWAS1552397 (human)1e-16cholesterol esters in medium LDL measurement155838798558387986Human
597519103GWAS1615177_Hserum gamma-glutamyl transferase measurement QTL GWAS1615177 (human)3e-13serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)155838798558387986Human
597487870GWAS1583944_Htotal cholesterol in large LDL QTL GWAS1583944 (human)7e-39total cholesterol in large LDL155838798558387986Human
596969969GWAS1089488_Hhigh density lipoprotein cholesterol measurement QTL GWAS1089488 (human)2e-35high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407114274GWAS763250_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS763250 (human)8e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597485301GWAS1581375_Htotal lipids in large LDL QTL GWAS1581375 (human)4e-69total lipids in large LDL155838798558387986Human
597513196GWAS1609270_Hintermediate density lipoprotein measurement QTL GWAS1609270 (human)2e-46intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838798558387986Human
596969953GWAS1089472_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089472 (human)2e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407111484GWAS760460_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS760460 (human)8e-31total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597459685GWAS1555759_Hlow density lipoprotein cholesterol measurement QTL GWAS1555759 (human)2e-80low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407111486GWAS760462_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS760462 (human)2e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597513191GWAS1609265_Htotal lipids in VLDL measurement QTL GWAS1609265 (human)8e-10blood lipid amount (VT:0003949)155838798558387986Human
596969966GWAS1089485_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1089485 (human)7e-35lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597515494GWAS1611568_Hcholesterol to total lipids in medium HDL percentage QTL GWAS1611568 (human)5e-37cholesterol to total lipids in medium HDL percentage 155838798558387986Human
596969961GWAS1089480_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089480 (human)4e-33free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597447392GWAS1543466_Hhigh density lipoprotein cholesterol measurement QTL GWAS1543466 (human)2e-31high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407111481GWAS760457_Hhigh density lipoprotein cholesterol measurement QTL GWAS760457 (human)2e-35high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597447394GWAS1543468_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1543468 (human)5e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596963606GWAS1083125_Hvery low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS1083125 (human)3e-29very low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597509659GWAS1605733_Htriglyceride measurement QTL GWAS1605733 (human)2e-08triglyceride measurementblood triglyceride level (CMO:0000118)155838798558387986Human
597526042GWAS1622116_Hphospholipids:total lipids ratio QTL GWAS1622116 (human)2e-153phospholipids:total lipids ratio155838798558387986Human
597488155GWAS1584229_Hcholesterol esters in large LDL measurement QTL GWAS1584229 (human)2e-32cholesterol esters in large LDL measurement155838798558387986Human
597509652GWAS1605726_Hhigh density lipoprotein cholesterol measurement QTL GWAS1605726 (human)2e-40high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597409552GWAS1505626_Hfree cholesterol in small LDL measurement QTL GWAS1505626 (human)2e-21blood LDL cholesterol amount (VT:0000181)155838798558387986Human
597447692GWAS1543766_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1543766 (human)4e-33free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597447694GWAS1543768_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1543768 (human)7e-35lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969734GWAS1089253_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089253 (human)5e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969731GWAS1089250_Hhigh density lipoprotein cholesterol measurement QTL GWAS1089250 (human)2e-31high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597525771GWAS1621845_Hfree cholesterol to total lipids in large LDL percentage QTL GWAS1621845 (human)3e-23blood cholesterol amount (VT:0000180)155838798558387986Human
597409798GWAS1505872_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1505872 (human)1e-12esterified cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
597456130GWAS1552204_Htotal cholesterol in medium LDL QTL GWAS1552204 (human)1e-18total cholesterol in medium LDL155838798558387986Human
597452547GWAS1548621_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1548621 (human)2e-28phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407114210GWAS763186_Hcholine measurement, phosphatidylcholine measurement QTL GWAS763186 (human)2e-22choline measurement, phosphatidylcholine measurement155838798558387986Human
597449531GWAS1545605_Hlow density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS1545605 (human)3e-30low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407106793GWAS755769_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS755769 (human)4e-31lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596970279GWAS1089798_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1089798 (human)2e-28phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597405737GWAS1501811_Htotal cholesterol in small LDL QTL GWAS1501811 (human)2e-14total cholesterol in small LDL155838798558387986Human
596969254GWAS1088773_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1088773 (human)5e-08free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597444393GWAS1540467_Hcholesterol:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1540467 (human)6e-274cholesterol:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838798558387986Human
597447977GWAS1544051_Hhigh density lipoprotein cholesterol measurement QTL GWAS1544051 (human)2e-35high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597405729GWAS1501803_Htotal lipids in small LDL QTL GWAS1501803 (human)9e-29total lipids in small LDL155838798558387986Human
597527646GWAS1623720_Hphospholipids in large LDL measurement QTL GWAS1623720 (human)9e-11phospholipids in large LDL measurementblood low density lipoprotein phospholipid level (CMO:0001568)155838798558387986Human
597408607GWAS1504681_Hlow density lipoprotein cholesterol measurement QTL GWAS1504681 (human)2e-34low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
596970064GWAS1089583_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089583 (human)8e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451866GWAS1547940_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547940 (human)1e-27free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
407107464GWAS756440_Hhigh density lipoprotein cholesterol measurement QTL GWAS756440 (human)8e-32high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597451863GWAS1547937_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547937 (human)8e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597618768GWAS1675628_Htriglyceride measurement QTL GWAS1675628 (human)3e-24triglyceride measurementblood triglyceride level (CMO:0000118)155838798558387986Human
407107472GWAS756448_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS756448 (human)2e-28phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597455685GWAS1551759_Hfree cholesterol in medium LDL measurement QTL GWAS1551759 (human)3e-27blood LDL cholesterol amount (VT:0000181)155838798558387986Human
597513537GWAS1609611_Htotal lipids in LDL measurement QTL GWAS1609611 (human)2e-11blood lipid amount (VT:0003949)155838798558387986Human
597527676GWAS1623750_Hphospholipids:total lipids ratio QTL GWAS1623750 (human)2e-20phospholipids:total lipids ratio155838798558387986Human
597444989GWAS1541063_Hcholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1541063 (human)3e-270cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838798558387986Human
596958071GWAS1077590_Hpolyunsaturated fatty acids to total fatty acids percentage QTL GWAS1077590 (human)3e-10fatty acid amount (VT:0010046)blood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597602926GWAS1659786_HHypercholesterolemia QTL GWAS1659786 (human)3e-13Hypercholesterolemiaserum gamma-glutamyltransferase activity level (CMO:0002241)155838798558387986Human
407113653GWAS762629_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS762629 (human)6e-16total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
596969318GWAS1088837_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1088837 (human)6e-10phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597444971GWAS1541045_Htriglycerides:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1541045 (human)1e-253triglycerides:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)155838798558387986Human
597521250GWAS1617324_Htriglyceride measurement QTL GWAS1617324 (human)8e-18triglyceride measurementblood triglyceride level (CMO:0000118)155838798558387986Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1659786_H GCST90479547 High cholesterol 28,037 African American or Afro-Caribbean cases, 27,468 African American or Afro-Caribbean controls, 14,887 Hispanic or Latin American cases, 14,427 Hispanic or Latin American controls, 1,998 East Asian ancestry cases, 1,549 East Asian ancestry controls, 176,604 European ancestry cases, 139,064 European ancestry controls C 0.6584 3E-13 12.523 rs7177289 0.04039 Hypercholesterolemia (HP:0003124)
 PMID:39024449
GWAS1675628_H GCST90480719 triglyceride (minimum, inv-norm transformed) 107,786 African American or Afro-Caribbean individuals, 53,539 Hispanic or Latin American individuals, 5,817 East Asian ancestry individuals, 391,797 European ancestry individuals C 0.6568 3E-24 23.523 rs7177289 0.02942 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1501803_H GCST90302097 Total lipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 9E-29 28.046 rs7177289 0.0454 total lipids in small LDL (EFO:0022168)
 PMID:38448586
GWAS1501811_H GCST90302091 Total Cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-14 13.699 rs7177289 0.0315 total cholesterol in small LDL (EFO:0022179)
 PMID:38448586
GWAS1504681_H GCST90302098 Concentration of small LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-34 33.699 rs7177289 0.0499 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1505626_H GCST90302095 Free cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-21 20.699 rs7177289 0.039 free cholesterol in small LDL measurement (EFO:0022271)
 PMID:38448586
GWAS1505872_H GCST90302093 Cholesterol esters in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 1E-12 12 rs7177289 0.0293 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1533903_H GCST90093031 Cholesteryl esters to total lipids ratio in very small VLDL 115,082 European ancestry individuals C 0.645987 3E-29 28.523 rs7177289 0.0455763 obsolete_vldl cholesterol measurement (EFO:0008317)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:35213538
GWAS1534174_H GCST90093029 Cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals C 0.645987 3E-34 33.523 rs7177289 0.0498032 obsolete_vldl cholesterol measurement (EFO:0008317)
cholesterol:total lipids ratio (EFO:0020943)
 PMID:35213538
GWAS1534241_H GCST90092967 Triglycerides to total lipids ratio in small LDL 115,082 European ancestry individuals C 0.645987 4E-162 161.398 rs7177289 0.112899 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1540467_H GCST90092832 Cholesterol to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 6E-274 273.222 rs7177289 0.14835 cholesterol:total lipids ratio (EFO:0020943)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1541045_H GCST90092842 Triglycerides to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 1E-253 253 rs7177289 0.140924 triglycerides:total lipids ratio (EFO:0020947)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1541063_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 3E-270 269.523 rs7177289 0.147632 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1543466_H GCST90091761 Postprandial total cholesterol in very large HDL null T 0.361858211 2E-31 30.699 rs7177289 0.26274 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543468_H GCST90091762 Postprandial cholesterol esters in very large HDL null T 0.361858211 5E-30 29.302 rs7177289 0.256749 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543766_H GCST90091763 Postprandial free cholesterol in very large HDL null T 0.361858211 4E-33 32.398 rs7177289 0.270379 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543768_H GCST90091764 Postprandial total lipids in very large HDL null T 0.361858211 7E-35 34.155 rs7177289 0.277701 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1544051_H GCST90091765 Postprandial very large HDL particle concentration null T 0.361858211 2E-35 34.699 rs7177289 0.280259 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091766 Postprandial phospholipid levels in very large HDL null T 0.361858211 3E-29 28.523 rs7177289 0.253349 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1545605_H GCST90092861 Free cholesterol to total lipids ratio in large LDL 115,082 European ancestry individuals C 0.645987 3E-30 29.523 rs7177289 0.0469903 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
GWAS1547246_H GCST90091507 Fasting apolipoprotein A-I null T 0.355815589 1E-19 19 rs7177289 0.193087 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:34610981
GWAS1547251_H GCST90091520 Fasting total cholesterol in HDL2 null T 0.35588684 6E-16 15.222 rs7177289 0.17269 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1547253_H GCST90091521 Fasting total cholesterol in HDL3 null T 0.355890767 8E-31 30.097 rs7177289 0.245322 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1547256_H GCST90091522 Fasting total cholesterol in HDL null T 0.355815589 2E-17 16.699 rs7177289 0.180921 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1547493_H GCST90091664 Postprandial total cholesterol in HDL null T 0.357895354 8E-17 16.097 rs7177289 0.184853 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091540 Fasting total cholesterol in large HDL null T 0.358261821 3E-29 28.523 rs7177289 0.243795 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1547937_H GCST90091541 Fasting cholesterol esters in large HDL null T 0.358261821 8E-30 29.097 rs7177289 0.245923 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1547940_H GCST90091542 Fasting free cholesterol in large HDL null T 0.358261821 1E-27 27 rs7177289 0.236141 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1548270_H GCST90091543 Fasting total lipids in large HDL null T 0.358261821 4E-31 30.398 rs7177289 0.251551 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1548271_H GCST90091544 Fasting large HDL particle concentration null T 0.358261821 8E-32 31.097 rs7177289 0.254537 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1548621_H GCST90091545 Fasting phospholipid levels in large HDL null T 0.358261821 2E-28 27.699 rs7177289 0.239955 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1549515_H GCST90091703 Postprandial free cholesterol in medium HDL null T 0.357977686 5E-8 7.302 rs7177289 0.121417 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1549516_H GCST90091706 Postprandial phospholipid levels in medium HDL null T 0.357977686 6E-10 9.222 rs7177289 0.137304 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1549592_H GCST90091566 Fasting phospholipid levels in medium HDL null T 0.356386393 3E-10 9.523 rs7177289 0.134927 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1549598_H GCST90091583 Fasting phosphatidylcholine and other cholines null T 0.355746432 2E-22 21.699 rs7177289 0.211462 choline measurement (EFO:0010116)
phosphatidylcholine measurement (EFO:0010226)
 PMID:34610981
GWAS1550285_H GCST90013407 Liver enzyme levels (gamma-glutamyl transferase) 437,194 European ancestry individuals C 0.645118 5E-12 11.302 rs7177289 0.00366283 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:33972514
GWAS1551759_H GCST90302047 Free cholesterol in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 3E-27 26.523 rs7177289 0.0445 free cholesterol in medium LDL measurement (EFO:0022268)
 PMID:38448586
GWAS1552204_H GCST90302043 Total cholesterol in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 1E-18 18 rs7177289 0.0364 total cholesterol in medium LDL (EFO:0022185)
 PMID:38448586
GWAS1552397_H GCST90302045 Cholesterol esters in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 1E-16 16 rs7177289 0.0342 cholesterol esters in medium LDL measurement (EFO:0022186)
 PMID:38448586
GWAS1555686_H GCST90302050 Concentration of medium LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 4E-45 44.398 rs7177289 0.0575 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1555759_H GCST90302014 Concentration of large LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-80 79.699 rs7177289 0.0774 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1556001_H GCST90302049 Total lipid levels in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 9E-38 37.046 rs7177289 0.0524 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:38448586
GWAS1581375_H GCST90302013 Total lipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 4E-69 68.398 rs7177289 0.0716 total lipids in large LDL (EFO:0022163)
 PMID:38448586
GWAS1582817_H GCST90301991 Total cholesterol levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 7E-27 26.155 rs7177289 0.0442 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1582877_H GCST90302106 Cholesterol esters in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3617 1E-42 42 rs7177289 0.0554 obsolete_vldl cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
GWAS1583944_H GCST90302007 Total cholesterol in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 7E-39 38.155 rs7177289 0.0537 total cholesterol in large LDL (EFO:0022167)
 PMID:38448586
GWAS1584229_H GCST90302009 Cholesterol esters in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3615 2E-32 31.699 rs7177289 0.0488 cholesterol esters in large LDL measurement (EFO:0022165)
 PMID:38448586
GWAS1605726_H GCST90239653 High density lipoprotein cholesterol levels 48,057 Hispanic individuals T 0.322352 2E-40 39.699 rs7177289 0.0970526 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS1605733_H GCST90239666 Triglyceride levels 40,963 South Asian ancestry individuals T 0.331142 2E-8 7.699 rs7177289 0.0439511 triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS1609265_H GCST90269521 Total lipids in VLDL (UKB data field 23424) 88,329 European ancestry individuals T 0.353964 8E-10 9.097 rs7177289 0.0298515 total lipids in VLDL measurement (EFO:0022314)
 PMID:36764567
GWAS1609270_H GCST90269620 Concentration of IDL particles (UKB data field 23523) 88,329 European ancestry individuals T 0.353964 2E-46 45.699 rs7177289 0.0701415 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:36764567
GWAS1609611_H GCST90269522 Total lipids in LDL (UKB data field 23425) 88,329 European ancestry individuals T 0.353964 2E-11 10.699 rs7177289 0.0333513 total lipids in LDL measurement (EFO:0022308)
 PMID:36764567
GWAS1610000_H GCST90269719 Free cholesterol to total lipids in medium LDL percentage (UKB data field 23622) 88,329 European ancestry individuals T 0.353964 7E-38 37.155 rs7177289 0.0612333 free cholesterol to total lipids in medium LDL percentage (EFO:0022283)
 PMID:36764567
None Available GCST90269550 Polyunsaturated fatty acids to total fatty acids percentage (UKB data field 23453) 88,268 European ancestry individuals T 0.353995 3E-10 9.523 rs7177289 0.0299281 polyunsaturated fatty acids to total fatty acids percentage (EFO:0022303)
 PMID:36764567
GWAS1611520_H GCST90269544 Monounsaturated fatty acids levels (UKB data field 23447) 88,268 European ancestry individuals T 0.353995 5E-51 50.302 rs7177289 0.0734587 monounsaturated fatty acids (EFO:0022187)
 PMID:36764567
GWAS1611568_H GCST90269737 Cholesterol to total lipids in medium HDL percentage (UKB data field 23640) 88,329 European ancestry individuals T 0.353964 5E-37 36.302 rs7177289 0.0603484 cholesterol to total lipids in medium HDL percentage (EFO:0022237)
 PMID:36764567
GWAS1612511_H GCST90269745 Triglycerides to total lipids in small HDL percentage (UKB data field 23648) 88,329 European ancestry individuals T 0.353964 3E-90 89.523 rs7177289 0.0953169 triglycerides to total lipids in small HDL percentage (EFO:0022336)
 PMID:36764567
GWAS1612748_H GCST90269675 Triglycerides in small HDL (UKB data field 23578) 88,329 European ancestry individuals T 0.353964 6E-63 62.222 rs7177289 0.0806102 triglycerides in small HDL measurement (EFO:0022158)
 PMID:36764567
GWAS1615177_H GCST90428730 Gamma glutamyl transferase levels 875,069 European ancestry individuals T NR 3E-13 12.523 rs7177289 0.0039 serum gamma-glutamyl transferase measurement (EFO:0004532)
 PMID:38632349
GWAS1617324_H GCST90269504 Total triglycerides levels (UKB data field 23407) 88,329 European ancestry individuals T 0.353964 8E-18 17.097 rs7177289 0.0412852 triglyceride measurement (EFO:0004530)
 PMID:36764567
GWAS1621845_H GCST90269714 Free cholesterol to total lipids in large LDL percentage (UKB data field 23617) 88,329 European ancestry individuals T 0.353964 3E-23 22.523 rs7177289 0.0470791 free cholesterol to total lipids in large LDL percentage (EFO:0022280)
 PMID:36764567
GWAS1622116_H GCST90269686 Phospholipids to total lipids in large VLDL percentage (UKB data field 23589) 88,321 European ancestry individuals T 0.353968 2E-153 152.699 rs7177289 0.126969 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS1623720_H GCST90269629 Phospholipids in large LDL (UKB data field 23532) 88,329 European ancestry individuals T 0.353964 9E-11 10.046 rs7177289 0.0319272 phospholipids in large LDL measurement (EFO:0022174)
 PMID:36764567
GWAS1623750_H GCST90269696 Phospholipids to total lipids in small VLDL percentage (UKB data field 23599) 88,329 European ancestry individuals T 0.353964 2E-20 19.699 rs7177289 0.0440958 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
Database Acc Id Source(s)
GWAS Catalog GCST90091764 GWAS Catalog

RGD Curation Notes
Note Type Note Reference