GWAS760457_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS760457_H (high density lipoprotein cholesterol measurement QTL GWAS760457 (human)) Homo sapiens

Symbol: GWAS760457_H
Name: high density lipoprotein cholesterol measurement QTL GWAS760457 (human)
RGD ID: 407111481
Trait: high density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 2.0E-35
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,387,985 - 58,387,986RGD_MAPPER_PIPELINEGRCh38
GRCh371558,680,184 - 58,680,185RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs7177289)
Human AssemblyChrPosition (strand)Source
GRCh381558,387,985 - 58,387,986RGD_MAPPER_PIPELINE


1 to 10 of 100 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597459612GWAS1555686_Hlow density lipoprotein cholesterol measurement QTL GWAS1555686 (human)4e-45low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407111495GWAS760471_Hhigh density lipoprotein cholesterol measurement QTL GWAS760471 (human)2e-31high density lipoprotein cholesterol measurement155838798558387986Human
597451419GWAS1547493_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1547493 (human)8e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838798558387986Human
597516437GWAS1612511_Htriglycerides to total lipids in small HDL percentage QTL GWAS1612511 (human)3e-90blood HDL triglyceride amount (VT:0010698)155838798558387986Human
597486743GWAS1582817_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1582817 (human)7e-27total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838798558387986Human
407111496GWAS760472_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS760472 (human)7e-35lipid measurement, high density lipoprotein cholesterol measurement155838798558387986Human
596970136GWAS1089655_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1089655 (human)8e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurement155838798558387986Human
407111510GWAS760486_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS760486 (human)5e-30esterified cholesterol measurement, high density lipoprotein cholesterol measurement155838798558387986Human
596969607GWAS1089126_Hapolipoprotein A 1 measurement QTL GWAS1089126 (human)1e-19apolipoprotein A 1 measurement155838798558387986Human
407116368GWAS765344_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS765344 (human)3e-10polyunsaturated fatty acids to total fatty acids percentage 155838798558387986Human

1 to 10 of 100 rows


1 to 20 of 64 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1659786_H GCST90479547 High cholesterol 28,037 African American or Afro-Caribbean cases, 27,468 African American or Afro-Caribbean controls, 14,887 Hispanic or Latin American cases, 14,427 Hispanic or Latin American controls, 1,998 East Asian ancestry cases, 1,549 East Asian ancestry controls, 176,604 European ancestry cases, 139,064 European ancestry controls C 0.6584 3E-13 12.523 rs7177289 0.04039 Hypercholesterolemia (HP:0003124)
 PMID:39024449
GWAS1675628_H GCST90480719 triglyceride (minimum, inv-norm transformed) 107,786 African American or Afro-Caribbean individuals, 53,539 Hispanic or Latin American individuals, 5,817 East Asian ancestry individuals, 391,797 European ancestry individuals C 0.6568 3E-24 23.523 rs7177289 0.02942 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1757984_H GCST90093029 Cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals C 0.645987 3E-34 33.523 rs7177289 0.0498032 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758094_H GCST90093031 Cholesteryl esters to total lipids ratio in very small VLDL 115,082 European ancestry individuals C 0.645987 3E-29 28.523 rs7177289 0.0455763 cholesteryl esters:total lipids ratio (EFO:0020944)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758283_H GCST90302106 Cholesterol esters in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3617 1E-42 42 rs7177289 0.0554 esterified cholesterol measurement (EFO:0008589)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1501803_H GCST90302097 Total lipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 9E-29 28.046 rs7177289 0.0454 total lipids in small LDL (EFO:0022168)
 PMID:38448586
GWAS1501811_H GCST90302091 Total Cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-14 13.699 rs7177289 0.0315 total cholesterol in small LDL (EFO:0022179)
 PMID:38448586
GWAS1504681_H GCST90302098 Concentration of small LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-34 33.699 rs7177289 0.0499 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1505626_H GCST90302095 Free cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 2E-21 20.699 rs7177289 0.039 free cholesterol in small LDL measurement (EFO:0022271)
 PMID:38448586
GWAS1505872_H GCST90302093 Cholesterol esters in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.3616 1E-12 12 rs7177289 0.0293 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1534241_H GCST90092967 Triglycerides to total lipids ratio in small LDL 115,082 European ancestry individuals C 0.645987 4E-162 161.398 rs7177289 0.112899 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1540467_H GCST90092832 Cholesterol to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 6E-274 273.222 rs7177289 0.14835 cholesterol:total lipids ratio (EFO:0020943)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1541045_H GCST90092842 Triglycerides to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 1E-253 253 rs7177289 0.140924 triglycerides:total lipids ratio (EFO:0020947)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1541063_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals C 0.645987 3E-270 269.523 rs7177289 0.147632 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1543466_H GCST90091761 Postprandial total cholesterol in very large HDL null T 0.361858211 2E-31 30.699 rs7177289 0.26274 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543468_H GCST90091762 Postprandial cholesterol esters in very large HDL null T 0.361858211 5E-30 29.302 rs7177289 0.256749 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543766_H GCST90091763 Postprandial free cholesterol in very large HDL null T 0.361858211 4E-33 32.398 rs7177289 0.270379 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1543768_H GCST90091764 Postprandial total lipids in very large HDL null T 0.361858211 7E-35 34.155 rs7177289 0.277701 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1544051_H GCST90091765 Postprandial very large HDL particle concentration null T 0.361858211 2E-35 34.699 rs7177289 0.280259 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091766 Postprandial phospholipid levels in very large HDL null T 0.361858211 3E-29 28.523 rs7177289 0.253349 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
1 to 20 of 64 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90091765 GWAS Catalog

Note Type Note Reference