GWAS704077_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS704077_H (chronotype measurement QTL GWAS704077 (human)) Homo sapiens

Symbol: GWAS704077_H
Name: chronotype measurement QTL GWAS704077 (human)
RGD ID: 407055101
Trait: sleep behavior trait   (VT:0001501)    
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,396,290 - 77,396,291RGD_MAPPER_PIPELINEGRCh38
GRCh37177,861,975 - 77,861,976RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS704077_HHumansleep behavior trait  IAGPrs10873936405850206Based on the EFO term IDGWAS_CATALOGPMID:30804565

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS704077_HHumanchronotype measurement  IAGPrs10873936405850206 GWAS_CATALOGPMID:30804565

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353587AK5adenylate kinase 517728201977559966Human


Peak: (rs10873936)
Human AssemblyChrPosition (strand)Source
GRCh38177,396,290 - 77,396,291RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human
407055101GWAS704077_Hchronotype measurement QTL GWAS704077 (human)9e-09sleep behavior trait (VT:0001501)17739629077396291Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS704077_H GCST007983 Morningness 434,835 European ancestry individuals A 0.3098 9E-9 8.046 rs10873936 0.013 chronotype measurement (EFO:0008328)
 PMID:30804565
Database
Acc Id
Source(s)
GWAS Catalog GCST007983 GWAS Catalog

Note Type Note Reference