GWAS703265_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS703265_H (obsolete_red blood cell distribution width QTL GWAS703265 (human)) Homo sapiens

Symbol: GWAS703265_H
Name: obsolete_red blood cell distribution width QTL GWAS703265 (human)
RGD ID: 407054289
Trait: obsolete_red blood cell distribution width
Measurement Type: red blood cell distribution width- standard deviation   (CMO:0003232)    
red blood cell distribution width-coefficient of variation   (CMO:0000041)    
LOD Score: Not Available
P Value: 3.0E-43
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,507,119 - 23,507,120RGD_MAPPER_PIPELINEGRCh38
GRCh37123,833,611 - 23,833,612RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS703265_HHumanred blood cell distribution width- standard deviation  IAGPrs12026768405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493
GWAS703265_HHumanred blood cell distribution width-coefficient of variation  IAGPrs12026768405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS703265_HHumanobsolete_red blood cell distribution width  IAGPrs12026768405850206 GWAS_CATALOGPMID:32888493
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348982E2F2E2F transcription factor 212350521223531233Human

Position Markers

Peak: (rs12026768)
Human AssemblyChrPosition (strand)Source
GRCh38123,507,119 - 23,507,120RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407054289GWAS703265_Hobsolete_red blood cell distribution width QTL GWAS703265 (human)3e-43obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
597080068GWAS1176142_HRed cell distribution width QTL GWAS1176142 (human)3e-43Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
596953639GWAS1073158_HRed cell distribution width QTL GWAS1073158 (human)3e-43Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
407056631GWAS705607_Hobsolete_red blood cell distribution width QTL GWAS705607 (human)4e-46obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
597080814GWAS1176888_HRed cell distribution width QTL GWAS1176888 (human)4e-46Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
596951119GWAS1070638_HRed cell distribution width QTL GWAS1070638 (human)4e-46Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12350711923507120Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1176142_H GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.504092 3E-43 42.523 rs12026768 N/A Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1176888_H GCST90002369 Red cell distribution width 531,774 European ancestry individuals G 0.491797 4E-46 45.398 rs12026768 0.026771 Red cell distribution width (EFO:0009188)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90002372 GWAS Catalog

RGD Curation Notes
Note Type Note Reference