GWAS702724_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS702724_H (monocyte percentage of leukocytes QTL GWAS702724 (human)) Homo sapiens

Symbol: GWAS702724_H
Name: monocyte percentage of leukocytes QTL GWAS702724 (human)
RGD ID: 407053748
Trait: monocyte percentage of leukocytes
Measurement Type: blood monocyte count to total leukocyte count ratio   (CMO:0000374)    
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38629,942,990 - 29,942,991RGD_MAPPER_PIPELINEGRCh38
GRCh37629,910,767 - 29,910,768RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS702724_HHumanblood monocyte count to total leukocyte count ratio  IAGPrs1136689405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS702724_HHumanmonocyte percentage of leukocytes  IAGPrs1136689405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
151673698LOC124901298uncharacterized LOC12490129862992819829945593Human
1349444HLA-Amajor histocompatibility complex, class I, A62994253229945870Human

Position Markers

Peak: (rs1136689)
Human AssemblyChrPosition (strand)Source
GRCh38629,942,990 - 29,942,991RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
407053748GWAS702724_Hmonocyte percentage of leukocytes QTL GWAS702724 (human)8e-12monocyte percentage of leukocytesblood monocyte count to total leukocyte count ratio (CMO:0000374)62994299029942991Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS702724_H GCST90002394 Monocyte percentage of white cells 408,112 British individuals C 0.145613 8E-12 11.097 rs1136689 0.022252768 monocyte percentage of leukocytes (EFO:0007989)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002394 GWAS Catalog

RGD Curation Notes
Note Type Note Reference