GWAS700425_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS700425_H (corneal topography QTL GWAS700425 (human)) Homo sapiens

Symbol: GWAS700425_H
Name: corneal topography QTL GWAS700425 (human)
RGD ID: 407051449
Trait: corneal topography
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,111,169 - 11,111,170RGD_MAPPER_PIPELINEGRCh38
GRCh37111,171,226 - 11,171,227RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS700425_HHumancorneal topography  IAGPrs17036350405850206 GWAS_CATALOGPMID:21665993

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
68533MTORmechanistic target of rapamycin kinase11110653511262551Human


Peak: (rs17036350)
Human AssemblyChrPosition (strand)Source
GRCh38111,111,169 - 11,111,170RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407051449GWAS700425_Hcorneal topography QTL GWAS700425 (human)4e-13corneal topography11111116911111170Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS700425_H GCST001101 Corneal curvature 2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals T 0.20 4E-13 12.398 rs17036350 0.178 corneal topography (EFO:0004345)
 PMID:21665993
Database
Acc Id
Source(s)
GWAS Catalog GCST001101 GWAS Catalog

Note Type Note Reference