GWAS700425_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS700425_H (corneal topography QTL GWAS700425 (human)) Homo sapiens

Symbol: GWAS700425_H
Name: corneal topography QTL GWAS700425 (human)
RGD ID: 407051449
Trait: corneal topography
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,111,169 - 11,111,170RGD_MAPPER_PIPELINEGRCh38
GRCh37111,171,226 - 11,171,227RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS700425_HHumancorneal topography  IAGPrs17036350405850206 GWAS_CATALOGPMID:21665993
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68533MTORmechanistic target of rapamycin kinase11110653511262551Human

Position Markers

Peak: (rs17036350)
Human AssemblyChrPosition (strand)Source
GRCh38111,111,169 - 11,111,170RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407051449GWAS700425_Hcorneal topography QTL GWAS700425 (human)4e-13corneal topography11111116911111170Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS700425_H GCST001101 Corneal curvature 2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals T 0.20 4E-13 12.398 rs17036350 0.178 corneal topography (EFO:0004345)
 PMID:21665993
Database Acc Id Source(s)
GWAS Catalog GCST001101 GWAS Catalog

RGD Curation Notes
Note Type Note Reference