GWAS658513_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS658513_H (chronotype measurement QTL GWAS658513 (human)) Homo sapiens

Symbol: GWAS658513_H
Name: chronotype measurement QTL GWAS658513 (human)
RGD ID: 407009537
Trait: chronotype measurement
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,677,093 - 58,677,094RGD_MAPPER_PIPELINEGRCh38
GRCh371558,969,292 - 58,969,293RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS658513_HHumanchronotype measurement  IAGPrs4775086405850206 GWAS_CATALOGPMID:30696823
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735847ADAM10ADAM metallopeptidase domain 10155858880958749707Human

Position Markers

Peak: (rs4775086)
Human AssemblyChrPosition (strand)Source
GRCh381558,677,093 - 58,677,094RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407009537GWAS658513_Hchronotype measurement QTL GWAS658513 (human)1e-08chronotype measurement155867709358677094Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
406928649GWAS577625_Hcigarettes per day measurement QTL GWAS577625 (human)3e-09cigarettes per day measurement155867709358677094Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS577625_H GCST90243976 Cigarettes smoked per day 618,489 European ancestry individuals A 0.24 3E-9 8.523 rs4775086 0.0124 cigarettes per day measurement (EFO:0006525)
 PMID:36477530
GWAS658513_H GCST007576 Chronotype 449,734 European ancestry individuals G 0.7637 1E-8 8 rs4775086 1.0270597 chronotype measurement (EFO:0008328)
 PMID:30696823
Database Acc Id Source(s)
GWAS Catalog GCST007576 GWAS Catalog

RGD Curation Notes
Note Type Note Reference