GWAS618993_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS618993_H (cannabis dependence QTL GWAS618993 (human)) Homo sapiens

Symbol: GWAS618993_H
Name: cannabis dependence QTL GWAS618993 (human)
RGD ID: 406970017
Trait: cannabis dependence
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381583,280,999 - 83,281,000RGD_MAPPER_PIPELINEGRCh38
GRCh371583,949,751 - 83,949,752RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS618993_HHumancannabis dependence  IAGPrs11259905405850206 GWAS_CATALOGPMID:37156939
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1319162BNC1basonuclin zinc finger protein 1158325588483284664Human

Position Markers

Peak: (rs11259905)
Human AssemblyChrPosition (strand)Source
GRCh381583,280,999 - 83,281,000RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406970017GWAS618993_Hcannabis dependence QTL GWAS618993 (human)2e-08cannabis dependence158328099983281000Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS618993_H GCST90296427 Cannabis use disorder (MTAG) 48,900 European ancestry individuals (MTAG effective sample size boosted by opioid use disorder, alcohol use disorder, smoking samples) ? NR 2E-8 7.699 rs11259905 0.0217575 cannabis dependence (EFO:0007191)
 PMID:37156939
Database Acc Id Source(s)
GWAS Catalog GCST90296427 GWAS Catalog

RGD Curation Notes
Note Type Note Reference