rs11259905 Rat Genome Database

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Variant: rs11259905 -  Homo sapiens

RGD ID: 406284407
RS ID: rs11259905
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: BNC1  
Reference Nucleotide: A
Variant Nucleotide: ?
Position
Assembly Chr Position
GRCh38 15 83,280,999
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs11259905Humancannabis dependence  IAGP 405850206 GWAS_CATALOGPMID:37156939
Disease Annotations     Click to see Annotation Detail View

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS618993_H GCST90296427 Cannabis use disorder (MTAG) 48,900 European ancestry individuals (MTAG effective sample size boosted by opioid use disorder, alcohol use disorder, smoking samples) ? NR 2E-8 7.699 rs11259905 0.0217575 cannabis dependence (EFO:0007191)
PMID:37156939

Variant Details
Variant Transcripts
Gene Symbol:BNC1
Accession:NM_001717
Location:INTRON

Gene Symbol:BNC1
Accession:NM_001301206
Location:INTRON

Gene Symbol:BNC1
Accession:XM_011521893
Location:INTRON

Gene Symbol:BNC1
Accession:XM_011521894
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90296427 GWAS Catalog