GWAS603619_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS603619_H (self reported educational attainment QTL GWAS603619 (human)) Homo sapiens

Symbol: GWAS603619_H
Name: self reported educational attainment QTL GWAS603619 (human)
RGD ID: 406954643
Trait: self reported educational attainment
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,524,238 - 77,524,239RGD_MAPPER_PIPELINEGRCh38
GRCh37177,989,923 - 77,989,924RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS603619_HHumanself reported educational attainment  IAGPrs12754946405850206 GWAS_CATALOGPMID:27225129

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353587AK5adenylate kinase 517728201977559966Human


Peak: (rs12754946)
Human AssemblyChrPosition (strand)Source
GRCh38177,524,238 - 77,524,239RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597459660GWAS1555734_Heducational attainment, bipolar disorder QTL GWAS1555734 (human)1e-10educational attainment, bipolar disorder17752423877524239Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
406954643GWAS603619_Hself reported educational attainment QTL GWAS603619 (human)1e-08self reported educational attainment17752423877524239Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
597034835GWAS1130909_Hbipolar I disorder QTL GWAS1130909 (human)0.0000003bipolar I disorder17752423877524239Human
597054049GWAS1150123_Hhousehold income QTL GWAS1150123 (human)5e-08household income17752423877524239Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS603619_H GCST003676 Educational attainment (years of education) 405,072 European ancestry individuals T 0.5731 1E-8 8 rs12754946 0.012757824 self reported educational attainment (EFO:0004784)
 PMID:27225129
GWAS1130909_H GCST008115 Bipolar I disorder 14,879 European ancestry cases, 31,358 European ancestry controls T 0.575 3E-7 6.523 rs12754946 1.0835 bipolar I disorder (EFO:0009963)
 PMID:31043756
GWAS1150123_H GCST009524 Household income (MTAG) 505,541 British and unknown ancestry individuals C 0.4456 5E-8 7.302 rs12754946 0.011152704 household income (EFO:0009695)
 PMID:31844048
GWAS1555734_H GCST90455646 Education attainment or bipolar disorder 293,723 European ancestry individuals with educational attainment, 20,352 European ancestry BD cases, 31,358 European ancestry controls T NR 1E-10 10 rs12754946 N/A educational attainment (EFO:0011015)
 PMID:38250258
Database
Acc Id
Source(s)
GWAS Catalog GCST003676 GWAS Catalog

Note Type Note Reference