GWAS595126_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS595126_H (protein measurement QTL GWAS595126 (human)) Homo sapiens

Symbol: GWAS595126_H
Name: protein measurement QTL GWAS595126 (human)
RGD ID: 406946150
Trait: protein measurement
LOD Score: Not Available
P Value: 2.0E-78
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38121,854,230 - 21,854,231RGD_MAPPER_PIPELINEGRCh38
GRCh37122,180,723 - 22,180,724RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS595126_HHumanprotein measurement  IAGPrs12742444405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1351428HSPG2heparan sulfate proteoglycan 212182224421937310Human

Position Markers

Peak: (rs12742444)
Human AssemblyChrPosition (strand)Source
GRCh38121,854,230 - 21,854,231RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406946150GWAS595126_Hprotein measurement QTL GWAS595126 (human)2e-78protein measurement12185423021854231Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS595126_H GCST90247953 Basement membrane-specific heparan sulfate proteoglycan core protein levels 10,708 European ancestry individuals T 0.06 2E-78 77.699 rs12742444 0.54 protein measurement (EFO:0004747)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90247953 GWAS Catalog

RGD Curation Notes
Note Type Note Reference