GWAS589411_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS589411_H (annexin A2 measurement QTL GWAS589411 (human)) Homo sapiens

Symbol: GWAS589411_H
Name: annexin A2 measurement QTL GWAS589411 (human)
RGD ID: 406940435
Trait: annexin A2 measurement
LOD Score: Not Available
P Value: 6E-987
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,396,980 - 60,396,981RGD_MAPPER_PIPELINEGRCh38
GRCh371560,689,179 - 60,689,180RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS589411_HHumanannexin A2 measurement  IAGPrs8033800405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736099ANXA2annexin A2156034715160397986Human
155752931LOC127829642H3K27ac hESC enhancer GRCh37_chr15:60689123-60689714156039692460397515Human

Position Markers

Peak: (rs8033800)
Human AssemblyChrPosition (strand)Source
GRCh381560,396,980 - 60,396,981RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406940435GWAS589411_Hannexin A2 measurement QTL GWAS589411 (human)6e-987annexin A2 measurement156039698060396981Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS589411_H GCST90246522 Annexin A2 levels 10,708 European ancestry individuals A 0.6 6E-987 986.222 rs8033800 0.781 annexin A2 measurement (EFO:0008027)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90246522 GWAS Catalog

RGD Curation Notes
Note Type Note Reference