D11Rat112 Marker Search Result - Rat Genome Database

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Advanced Search (OLGA)

Marker: D11Rat112

Symbol: D11Rat112
Previously known as: oxsts9263; R0312-D09; 
RGD ID: 42944
Expected Size: 157 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81129,377,777 - 29,377,934 (+)Marker Load Pipeline
mRatBN7.21115,890,819 - 15,890,978 (+)MAPPERmRatBN7.2
Rnor_6.01115,738,867 - 15,739,023NCBIRnor6.0
Rnor_5.01119,393,954 - 19,394,110UniSTSRnor5.0
RGSC_v3.41116,086,697 - 16,086,854RGDRGSC3.4
RGSC_v3.41116,086,698 - 16,086,854UniSTSRGSC3.4
RGSC_v3.11116,086,697 - 16,086,854RGD
Celera1115,897,626 - 15,897,780UniSTS
SHRSP x BN Map112.5099RGD
SHRSP x BN Map112.5099UniSTS


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTTGTATGTATACTCCCACTCCTCC
Reverse Primer CAAACGTTGCCTACCAATATCA
 
Template 
GNAGGTCGATCTAGAGGATCCCCCTCAGTGGCAACGATGATCTATTGCATTTGGGTCTTTATAA
GACTATTTGTATGTATACTCCCACTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGT
GTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATGTTCTGTTACATATTG
ATATTGGTAGGCAACGTTTGNAGTTCCTTCTAGGGTACCGAGNCTNCGAATTTCGTAATTCATG
GTTCATAGCTGTTTTCCTGTGTGAAATTGTTANCCGGCTACANAATTCCACACAATCATACGAG
GCCGGAAGCATAAAGTGTAAAGCCGGGGTGTCCAATGAGTGAGCTAACTCACATTAATTGNGTT
GCGCACACTGCCCGTCTTTTCCAGTNGGGAAACTGTCGTGNGAGTNGCATTTAATGAATCGGCC
AACGCGCGGGGAGAGGNGGTTTGNGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGGTGAG
ACGGGCAATAGTTNATTGCCCTTCANCNCTGGCCCTGAGAGAGGTGNAGCAAGCGGTCCACGCG
GTTTGCCCCAGCAGCGAAAATCCGTTTGAGGGNGGTTCCGAAATCGGCAAAATCCCTATAAATC
CNAAGAATAGCCCGAGATAGGGTTGAGTGTTGTTCAGTTNGAAAAGAGTCCATATTAAGAACGT
GGACTCCNNGTCAAGGGCGANAANGTCTATCAGGGGATGGCCACTACGTGNACATCCCAAANNN
TTTTGGGGCGNGGNGTANNANTNTNNNNTAAGGAGCNGNTNGNNTGNNGGAA

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
9119122LOC103693508uncharacterized LOC103693508111587174916295079Rat

Nucleotide Sequences
GenBank Nucleotide CH473989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat


Additional Information