Hivep1 (HIVEP zinc finger 1) - Rat Genome Database

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Gene: Hivep1 (HIVEP zinc finger 1) Rattus norvegicus
Analyze
Symbol: Hivep1
Name: HIVEP zinc finger 1
RGD ID: 727847
Description: Enables DNA binding activity. Predicted to be involved in BMP signaling pathway and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; mitochondrion; and nuclear body. Orthologous to human HIVEP1 (HIVEP zinc finger 1); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: human immunodeficiency virus type I enhancer binding protein 1; human immunodeficiency virus type I enhancer-binding protein 1; zinc finger protein 40
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81722,790,855 - 22,920,359 (-)NCBIGRCr8
mRatBN7.21722,585,016 - 22,714,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1722,585,016 - 22,711,956 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1722,460,828 - 22,586,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01724,064,530 - 24,189,957 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01722,394,600 - 22,520,764 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01722,278,103 - 22,403,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1722,278,798 - 22,311,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01724,256,199 - 24,381,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41728,448,075 - 28,576,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11728,451,132 - 28,476,492 (-)NCBI
Celera1722,260,876 - 22,386,443 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
epilepsy  (ISO)
myoepithelioma  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
caffeine  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (EXP,ISO)
gentamycin  (EXP)
geraniol  (ISO)
graphite  (EXP)
hexadecanoic acid  (ISO)
ketoconazole  (ISO)
leflunomide  (ISO)
mercury dibromide  (ISO)
methidathion  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
p-toluidine  (EXP)
paracetamol  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
mitochondrion  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Isolation of two cDNAs encoding zinc finger proteins which bind to the alpha 1-antitrypsin promoter and to the major histocompatibility complex class I enhancer. Mitchelmore C, etal., Nucleic Acids Res 1991 Jan 11;19(1):141-7.
5. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15778499   PMID:16582099   PMID:17008448   PMID:19732766  


Genomics

Comparative Map Data
Hivep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81722,790,855 - 22,920,359 (-)NCBIGRCr8
mRatBN7.21722,585,016 - 22,714,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1722,585,016 - 22,711,956 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1722,460,828 - 22,586,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01724,064,530 - 24,189,957 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01722,394,600 - 22,520,764 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01722,278,103 - 22,403,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1722,278,798 - 22,311,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01724,256,199 - 24,381,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41728,448,075 - 28,576,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11728,451,132 - 28,476,492 (-)NCBI
Celera1722,260,876 - 22,386,443 (-)NCBICelera
Cytogenetic Map17p12NCBI
HIVEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38612,007,693 - 12,212,048 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl612,008,762 - 12,164,999 (+)EnsemblGRCh38hg38GRCh38
GRCh37612,012,545 - 12,165,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36612,120,710 - 12,273,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 34612,120,556 - 12,273,214NCBI
Celera613,240,741 - 13,393,278 (+)NCBICelera
Cytogenetic Map6p24.1NCBI
HuRef611,947,241 - 12,096,869 (+)NCBIHuRef
CHM1_1612,014,828 - 12,167,353 (+)NCBICHM1_1
T2T-CHM13v2.0611,875,799 - 12,080,415 (+)NCBIT2T-CHM13v2.0
Hivep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,205,304 - 42,338,504 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,205,497 - 42,346,013 (+)EnsemblGRCm39 Ensembl
GRCm381342,051,899 - 42,185,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,052,021 - 42,192,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371342,147,390 - 42,280,395 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361342,066,475 - 42,195,485 (+)NCBIMGSCv36mm8
Celera1343,131,906 - 43,263,566 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1320.72NCBI
Hivep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554652,410,479 - 2,541,919 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554652,410,629 - 2,547,889 (-)NCBIChiLan1.0ChiLan1.0
HIVEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2526,659,767 - 26,854,538 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1622,650,034 - 22,802,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0611,847,552 - 12,003,710 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,117,201 - 12,364,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,286,017 - 12,363,803 (+)Ensemblpanpan1.1panPan2
HIVEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13511,551,270 - 11,705,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3511,555,221 - 11,705,002 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3511,502,895 - 11,651,930 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03511,656,500 - 11,799,299 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3511,655,769 - 11,804,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13511,493,382 - 11,628,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03511,535,290 - 11,678,086 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03512,866,947 - 13,002,637 (+)NCBIUU_Cfam_GSD_1.0
Hivep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494612,733,841 - 12,867,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365341,002,719 - 1,133,544 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365341,002,801 - 1,133,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl78,515,901 - 8,661,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.178,515,856 - 8,661,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.278,916,821 - 9,063,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HIVEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11759,987,718 - 60,143,296 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604412,031,926 - 12,214,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hivep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475613,968,483 - 14,094,872 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475613,968,588 - 14,094,716 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hivep1
495 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:70
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000019389
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat

Markers in Region
AU047457  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21722,651,960 - 22,652,188 (+)MAPPERmRatBN7.2
Rnor_6.01722,344,667 - 22,344,894NCBIRnor6.0
Rnor_5.01724,322,828 - 24,323,055UniSTSRnor5.0
RGSC_v3.41728,516,442 - 28,516,669UniSTSRGSC3.4
Celera1722,327,884 - 22,328,111UniSTS
Cytogenetic Map17p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 10 9 2 15 2 66 19 38 11
Low 2 33 48 39 4 39 8 11 8 16 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019389   ⟹   ENSRNOP00000019389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1722,585,016 - 22,711,956 (-)Ensembl
Rnor_6.0 Ensembl1722,278,798 - 22,311,392 (-)Ensembl
RefSeq Acc Id: NM_001105751   ⟹   NP_001099221
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,790,855 - 22,917,196 (-)NCBI
mRatBN7.21722,585,016 - 22,711,360 (-)NCBI
Rnor_6.01722,278,103 - 22,403,362 (-)NCBI
Rnor_5.01724,256,199 - 24,381,214 (-)NCBI
RGSC_v3.41728,448,075 - 28,576,606 (-)RGD
Celera1722,260,876 - 22,386,443 (-)RGD
Sequence:
RefSeq Acc Id: XM_039095308   ⟹   XP_038951236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,791,037 - 22,917,663 (-)NCBI
mRatBN7.21722,585,198 - 22,711,827 (-)NCBI
RefSeq Acc Id: XM_039095309   ⟹   XP_038951237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,791,037 - 22,920,359 (-)NCBI
mRatBN7.21722,585,198 - 22,714,517 (-)NCBI
RefSeq Acc Id: XM_039095310   ⟹   XP_038951238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,791,037 - 22,917,282 (-)NCBI
mRatBN7.21722,585,198 - 22,711,446 (-)NCBI
RefSeq Acc Id: XM_063276029   ⟹   XP_063132099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,791,037 - 22,871,637 (-)NCBI
RefSeq Acc Id: XM_063276030   ⟹   XP_063132100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,815,444 - 22,917,282 (-)NCBI
RefSeq Acc Id: XM_063276031   ⟹   XP_063132101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81722,815,444 - 22,917,663 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001099221   ⟸   NM_001105751
- UniProtKB: A6J757 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019389   ⟸   ENSRNOT00000019389
RefSeq Acc Id: XP_038951237   ⟸   XM_039095309
- Peptide Label: isoform X1
- UniProtKB: A6J757 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951236   ⟸   XM_039095308
- Peptide Label: isoform X1
- UniProtKB: A6J757 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951238   ⟸   XM_039095310
- Peptide Label: isoform X1
- UniProtKB: A6J757 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132099   ⟸   XM_063276029
- Peptide Label: isoform X2
- UniProtKB: F1M9H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132101   ⟸   XM_063276031
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063132100   ⟸   XM_063276030
- Peptide Label: isoform X3
Protein Domains
C2H2-type   CCHC HIVEP-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M9H4-F1-model_v2 AlphaFold F1M9H4 1-2110 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727847 AgrOrtholog
BioCyc Gene G2FUF-9777 BioCyc
Ensembl Genes ENSRNOG00000014460 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019389 ENTREZGENE
  ENSRNOT00000019389.8 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZF_CCHC_HIVEP UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:117140 UniProtKB/TrEMBL
NCBI Gene 117140 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 40 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Hivep1 PhenoGen
PROSITE ZF_CCHC_HIVEP UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014460 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A6J757 ENTREZGENE, UniProtKB/TrEMBL
  F1M9H4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-09 Hivep1  HIVEP zinc finger 1  Hivep1  HIVEP zinc finger 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-08-09 Hivep1  HIVEP zinc finger 1  Hivep1  human immunodeficiency virus type I enhancer binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Hivep1  human immunodeficiency virus type I enhancer binding protein 1    human immunodeficiency virus type I enhancer-binding protein 1  Name updated 1299863 APPROVED