HIVEP1 (HIVEP zinc finger 1) - Rat Genome Database

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Gene: HIVEP1 (HIVEP zinc finger 1) Pan paniscus
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Symbol: HIVEP1
Name: HIVEP zinc finger 1
RGD ID: 11996254
Description: ENCODES a protein that exhibits DNA binding (ortholog); HMG box domain binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH epilepsy (ortholog); myoepithelioma (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: human immunodeficiency virus type I enhancer binding protein 1; LOC100970117; LOC106634848; zinc finger protein 40; zinc finger protein 40-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2526,659,767 - 26,854,538 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1622,650,034 - 22,802,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0611,847,552 - 12,003,710 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,117,201 - 12,364,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,286,017 - 12,363,803 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HIVEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2526,659,767 - 26,854,538 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1622,650,034 - 22,802,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0611,847,552 - 12,003,710 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,117,201 - 12,364,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,286,017 - 12,363,803 (+)Ensemblpanpan1.1panPan2
HIVEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38612,007,693 - 12,212,048 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl612,008,762 - 12,164,999 (+)EnsemblGRCh38hg38GRCh38
GRCh37612,012,545 - 12,165,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36612,120,710 - 12,273,218 (+)NCBINCBI36Build 36hg18NCBI36
Build 34612,120,556 - 12,273,214NCBI
Celera613,240,741 - 13,393,278 (+)NCBICelera
Cytogenetic Map6p24.1NCBI
HuRef611,947,241 - 12,096,869 (+)NCBIHuRef
CHM1_1612,014,828 - 12,167,353 (+)NCBICHM1_1
T2T-CHM13v2.0611,875,799 - 12,080,415 (+)NCBIT2T-CHM13v2.0
Hivep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,205,304 - 42,338,504 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,205,497 - 42,346,013 (+)EnsemblGRCm39 Ensembl
GRCm381342,051,899 - 42,185,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,052,021 - 42,192,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371342,147,390 - 42,280,395 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361342,066,475 - 42,195,485 (+)NCBIMGSCv36mm8
Celera1343,131,906 - 43,263,566 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1320.72NCBI
Hivep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81722,790,855 - 22,920,359 (-)NCBIGRCr8
mRatBN7.21722,585,016 - 22,714,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1722,585,016 - 22,711,956 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1722,460,828 - 22,586,257 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01724,064,530 - 24,189,957 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01722,394,600 - 22,520,764 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01722,278,103 - 22,403,362 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1722,278,798 - 22,311,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01724,256,199 - 24,381,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41728,448,075 - 28,576,606 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11728,451,132 - 28,476,492 (-)NCBI
Celera1722,260,876 - 22,386,443 (-)NCBICelera
Cytogenetic Map17p12NCBI
Hivep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554652,410,479 - 2,541,919 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554652,410,629 - 2,547,889 (-)NCBIChiLan1.0ChiLan1.0
HIVEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13511,551,270 - 11,705,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3511,555,221 - 11,705,002 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3511,502,895 - 11,651,930 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03511,656,500 - 11,799,299 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3511,655,769 - 11,804,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13511,493,382 - 11,628,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03511,535,290 - 11,678,086 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03512,866,947 - 13,002,637 (+)NCBIUU_Cfam_GSD_1.0
Hivep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494612,733,841 - 12,867,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365341,002,719 - 1,133,544 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365341,002,801 - 1,133,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl78,515,901 - 8,661,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.178,515,856 - 8,661,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.278,916,821 - 9,063,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HIVEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11759,987,718 - 60,143,296 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604412,031,926 - 12,214,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hivep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475613,968,483 - 14,094,872 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475613,968,588 - 14,094,716 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000035556   ⟹   ENSPPAP00000012889
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl612,286,017 - 12,363,803 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000035560   ⟹   ENSPPAP00000012894
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl612,317,320 - 12,363,803 (+)Ensembl
RefSeq Acc Id: XM_034961442   ⟹   XP_034817333
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,660,102 - 26,812,410 (+)NCBI
NHGRI_mPanPan1622,650,341 - 22,802,558 (+)NCBI
Mhudiblu_PPA_v0611,851,551 - 12,003,710 (+)NCBI
RefSeq Acc Id: XM_034961444   ⟹   XP_034817335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,659,770 - 26,812,410 (+)NCBI
NHGRI_mPanPan1622,650,034 - 22,802,558 (+)NCBI
Mhudiblu_PPA_v0611,851,235 - 12,003,710 (+)NCBI
RefSeq Acc Id: XM_034961445   ⟹   XP_034817336
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,660,518 - 26,812,410 (+)NCBI
NHGRI_mPanPan1622,650,811 - 22,802,558 (+)NCBI
Mhudiblu_PPA_v0611,851,984 - 12,003,710 (+)NCBI
RefSeq Acc Id: XM_034961446   ⟹   XP_034817337
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,708,664 - 26,812,410 (+)NCBI
NHGRI_mPanPan1622,698,916 - 22,802,558 (+)NCBI
Mhudiblu_PPA_v0611,900,082 - 12,003,710 (+)NCBI
RefSeq Acc Id: XM_055113186   ⟹   XP_054969161
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,703,187 - 26,812,410 (+)NCBI
NHGRI_mPanPan1622,653,725 - 22,802,558 (+)NCBI
RefSeq Acc Id: XM_063605151   ⟹   XP_063461221
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2526,659,767 - 26,854,538 (+)NCBI
RefSeq Acc Id: XP_034817335   ⟸   XM_034961444
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A6G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817333   ⟸   XM_034961442
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A6G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817336   ⟸   XM_034961445
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A6G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817337   ⟸   XM_034961446
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A6G7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000012894   ⟸   ENSPPAT00000035560
Ensembl Acc Id: ENSPPAP00000012889   ⟸   ENSPPAT00000035556
RefSeq Acc Id: XP_054969161   ⟸   XM_055113186
- Peptide Label: isoform X3
- UniProtKB: A0A2R9A6H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063461221   ⟸   XM_063605151
- Peptide Label: isoform X4
Protein Domains
C2H2-type   CCHC HIVEP-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029599 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035556.1 UniProtKB/TrEMBL
  ENSPPAT00000035560.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZF_CCHC_HIVEP UniProtKB/TrEMBL
  Zinc-finger_DNA-bd_regulators UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100970117 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 40 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZF_CCHC_HIVEP UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9A6G7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A6H2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-26 HIVEP1  HIVEP zinc finger 1  HIVEP1  human immunodeficiency virus type I enhancer binding protein 1  Symbol and/or name change 5135510 APPROVED
2018-05-08 HIVEP1  human immunodeficiency virus type I enhancer binding protein 1  LOC106634848  zinc finger protein 40-like  Data merged from RGD:11823821 737654 PROVISIONAL
2018-05-08 HIVEP1  human immunodeficiency virus type I enhancer binding protein 1  LOC100970117  zinc finger protein 40  Symbol and/or name change 5135510 APPROVED