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Gene: C2h1orf54 (similar to human chromosome 1 open reading frame 54) Rattus norvegicus

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Symbol:

C2h1orf54

Name:

similar to human chromosome 1 open reading frame 54

RGD ID:

41092593

Description:

Predicted to act upstream of or within epithelial cell proliferation involved in renal tubule morphogenesis; phosphatidylinositol 3-kinase/protein kinase B signal transduction; and response to wounding. Orthologous to human C1orf54 (chromosome 1 open reading frame 54); INTERACTS WITH bisphenol A; 2,2',4,4'-Tetrabromodiphenyl ether (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

AC141102.1; chromosome 2 C1orf54 homolog; uncharacterized protein C1orf54 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,113,922 - 186,124,637 (-)	NCBI		GRCr8
mRatBN7.2	2	183,424,989 - 183,434,713 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,424,984 - 183,435,089 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	191,089,733 - 191,099,451 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,893,287 - 188,903,023 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,722,270 - 183,731,988 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0 Ensembl	2	197,996,981 - 198,002,625 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C2h1orf54	Rat	gastrointestinal stromal tumor		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
C2h1orf54	Rat	immunodeficiency 42		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency	ClinVar	PMID:28492532
C2h1orf54	Rat	MHC class II deficiency		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: MHC class II deficiency	ClinVar	PMID:28492532
C2h1orf54	Rat	parathyroid carcinoma		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
C2h1orf54	Rat	severe congenital neutropenia 3		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Kostmann syndrome	ClinVar	PMID:28492532
C2h1orf54	Rat	severe congenital neutropenia 5		ISO	C1orf54 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C2h1orf54	Rat	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	2 more ...	CTD	PMID:19095052
C2h1orf54	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of C1ORF54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of C1ORF54 mRNA	CTD	PMID:28628672
C2h1orf54	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	BC028528 (Mus musculus)	6480464	Fenretinide results in increased expression of C1ORF54 mRNA	CTD	PMID:28973697
C2h1orf54	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	C1orf54 (Homo sapiens)	6480464	Decitabine affects the expression of C1ORF54 mRNA	CTD	PMID:23300844
C2h1orf54	Rat	acrylamide	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	Acrylamide results in increased expression of C1ORF54 mRNA	CTD	PMID:32763439
C2h1orf54	Rat	aflatoxin B1	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of C1ORF54 mRNA	CTD	PMID:22100608
C2h1orf54	Rat	all-trans-retinoic acid	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Tretinoin results in decreased expression of C1ORF54 mRNA	CTD	PMID:33167477
C2h1orf54	Rat	benzo[a]pyrene	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of C1ORF54 mRNA	CTD	PMID:32234424
C2h1orf54	Rat	benzo[a]pyrene	increases methylation	ISO	C1orf54 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of C1ORF54 promoter	CTD	PMID:27901495
C2h1orf54	Rat	beta-lapachone	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	beta-lapachone results in increased expression of C1ORF54 mRNA	CTD	PMID:38218311
C2h1orf54	Rat	bisphenol A	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of C1ORF54 mRNA	CTD	PMID:28628672
C2h1orf54	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of C1ORF54 mRNA	CTD	PMID:25181051
C2h1orf54	Rat	bisphenol F	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of C1ORF54 mRNA	CTD	PMID:28628672
C2h1orf54	Rat	cadmium atom	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Cadmium results in decreased expression of C1ORF54 mRNA	CTD	PMID:24376830
C2h1orf54	Rat	cisplatin	affects expression	ISO	C1orf54 (Homo sapiens)	6480464	Cisplatin affects the expression of C1ORF54 mRNA	CTD	PMID:23300844
C2h1orf54	Rat	copper(II) sulfate	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of C1ORF54 mRNA	CTD	PMID:19549813
C2h1orf54	Rat	cyclosporin A	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	Cyclosporine results in increased expression of C1ORF54 mRNA	CTD	PMID:25562108 and PMID:27989131
C2h1orf54	Rat	dexamethasone	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of C1ORF54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of C1ORF54 mRNA	CTD	PMID:28628672
C2h1orf54	Rat	diuron	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Diuron results in decreased expression of C1ORF54 mRNA	CTD	PMID:35967413
C2h1orf54	Rat	dorsomorphin	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of C1ORF54 mRNA	CTD	PMID:27188386
C2h1orf54	Rat	elemental selenium	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Selenium results in decreased expression of C1ORF54 mRNA	CTD	PMID:19244175
C2h1orf54	Rat	indometacin	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of C1ORF54 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of C1ORF54 mRNA	CTD	PMID:28628672
C2h1orf54	Rat	kojic acid	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	kojic acid results in increased expression of C1ORF54 mRNA	CTD	PMID:16595896
C2h1orf54	Rat	lead diacetate	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	lead acetate results in decreased expression of C1ORF54 mRNA	CTD	PMID:38568856
C2h1orf54	Rat	N-methyl-4-phenylpyridinium	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	1-Methyl-4-phenylpyridinium results in increased expression of C1ORF54 mRNA	CTD	PMID:24810058
C2h1orf54	Rat	pioglitazone	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Pioglitazone results in decreased expression of C1ORF54 mRNA	CTD	PMID:30031879
C2h1orf54	Rat	propanal	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	propionaldehyde results in increased expression of C1ORF54 mRNA	CTD	PMID:26079696
C2h1orf54	Rat	SB 431542	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of C1ORF54 mRNA	CTD	PMID:27188386
C2h1orf54	Rat	selenium atom	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Selenium results in decreased expression of C1ORF54 mRNA	CTD	PMID:19244175
C2h1orf54	Rat	silicon dioxide	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	Silicon Dioxide analog results in increased expression of C1ORF54 mRNA	CTD	PMID:25895662
C2h1orf54	Rat	silicon dioxide	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Silicon Dioxide results in decreased expression of C1ORF54 mRNA	CTD	PMID:25351596
C2h1orf54	Rat	sodium arsenite	increases expression	ISO	C1orf54 (Homo sapiens)	6480464	sodium arsenite results in increased expression of C1ORF54 mRNA	CTD	PMID:38568856
C2h1orf54	Rat	sunitinib	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Sunitinib results in decreased expression of C1ORF54 mRNA	CTD	PMID:31533062
C2h1orf54	Rat	temozolomide	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Temozolomide results in decreased expression of C1ORF54 mRNA	CTD	PMID:31758290
C2h1orf54	Rat	testosterone enanthate	affects expression	ISO	C1orf54 (Homo sapiens)	6480464	testosterone enanthate affects the expression of C1ORF54 mRNA	CTD	PMID:17440010
C2h1orf54	Rat	troglitazone	increases expression	ISO	BC028528 (Mus musculus)	6480464	Troglitazone results in increased expression of C1ORF54 mRNA	CTD	PMID:28973697
C2h1orf54	Rat	troglitazone	decreases expression	ISO	BC028528 (Mus musculus)	6480464	Troglitazone results in decreased expression of C1ORF54 mRNA	CTD	PMID:28973697
C2h1orf54	Rat	valproic acid	affects expression	ISO	C1orf54 (Homo sapiens)	6480464	Valproic Acid affects the expression of C1ORF54 mRNA	CTD	PMID:25979313
C2h1orf54	Rat	valproic acid	decreases methylation	ISO	C1orf54 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of C1ORF54 gene	CTD	PMID:29154799
C2h1orf54	Rat	valproic acid	multiple interactions	ISO	C1orf54 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of C1ORF54 mRNA	CTD	PMID:27188386
C2h1orf54	Rat	valproic acid	decreases expression	ISO	C1orf54 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of C1ORF54 mRNA	CTD	PMID:23179753 more ...

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
C2h1orf54	Rat	epithelial cell proliferation involved in renal tubule morphogenesis	acts_upstream_of_or_within	ISO	BC028528 (Mus musculus)	1624291	PMID:29999589	RGD	PMID:29999589
C2h1orf54	Rat	phosphatidylinositol 3-kinase/protein kinase B signal transduction	acts_upstream_of_or_within	ISO	BC028528 (Mus musculus)	1624291	PMID:29999589	RGD	PMID:29999589
C2h1orf54	Rat	response to wounding	acts_upstream_of_or_within	ISO	BC028528 (Mus musculus)	1624291	PMID:29999589	RGD	PMID:29999589

C2h1orf54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,113,922 - 186,124,637 (-)	NCBI		GRCr8
mRatBN7.2	2	183,424,989 - 183,434,713 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,424,984 - 183,435,089 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	191,089,733 - 191,099,451 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,893,287 - 188,903,023 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,722,270 - 183,731,988 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0 Ensembl	2	197,996,981 - 198,002,625 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	2	q34	NCBI

C1orf54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,268,731 - 150,280,924 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,268,200 - 150,280,916 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	150,244,687 - 150,253,335 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,511,822 - 148,519,951 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	123,360,914 - 123,369,066 (+)	NCBI		Celera
Cytogenetic Map	1	q21.2	NCBI
HuRef	1	121,623,849 - 121,631,991 (+)	NCBI		HuRef
CHM1_1	1	151,640,906 - 151,649,050 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	149,393,648 - 149,405,849 (+)	NCBI		T2T-CHM13v2.0

BC028528
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,789,665 - 95,800,186 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,791,266 - 95,799,317 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,883,945 - 95,892,062 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,883,954 - 95,892,005 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,688,896 - 95,695,853 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,969,371 - 95,977,353 (-)	NCBI		MGSCv36	mm8
Celera	3	97,318,500 - 97,325,453 (-)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	41.44	NCBI

CUNH1orf54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	497,012 - 503,792 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	496,136 - 505,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	99,557,730 - 99,569,995 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	99,311,703 - 99,323,588 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	125,614,337 - 125,626,216 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,268,704 - 129,277,135 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,269,073 - 129,277,135 (+)	Ensembl	panpan1.1		panPan2

C17H1orf54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,514,661 - 59,522,685 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,516,519 - 59,523,562 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,959,879 - 58,969,923 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,528,960 - 60,539,147 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,532,105 - 60,539,120 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,359,408 - 59,369,616 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,443,136 - 59,453,417 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,171,130 - 60,181,173 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH1orf54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,525,560 - 21,533,585 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	557,976 - 563,969 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	557,992 - 563,957 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C4H1orf54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,805,588 - 98,814,563 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,806,352 - 98,814,627 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CUNH1orf54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	13,012,075 - 13,020,377 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,024,149 - 18,034,506 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	18,024,288 - 18,034,457 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in C2h1orf54
25 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001399778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001419507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000091888 ⟹ ENSRNOP00000070942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	183,424,984 - 183,435,089 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094373 ⟹ ENSRNOP00000097630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	183,425,001 - 183,434,932 (-)	Ensembl

RefSeq Acc Id:

NM_001399778 ⟹ NP_001386707

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,646 (-)	NCBI
mRatBN7.2	2	183,424,989 - 183,434,713 (-)	NCBI

RefSeq Acc Id:

NM_001399779 ⟹ NP_001386708

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,646 (-)	NCBI
mRatBN7.2	2	183,424,989 - 183,434,713 (-)	NCBI

RefSeq Acc Id:

NM_001419507 ⟹ NP_001406436

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,645 (-)	NCBI
mRatBN7.2	2	183,424,989 - 183,434,712 (-)	NCBI

RefSeq Acc Id:

XM_063281202 ⟹ XP_063137272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,637 (-)	NCBI

RefSeq Acc Id:

XM_063281203 ⟹ XP_063137273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,637 (-)	NCBI

RefSeq Acc Id:

XM_063281204 ⟹ XP_063137274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,124,637 (-)	NCBI

RefSeq Acc Id:

XM_063281205 ⟹ XP_063137275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,124,637 (-)	NCBI

RefSeq Acc Id:

XM_063281206 ⟹ XP_063137276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,996 (-)	NCBI

RefSeq Acc Id:

XM_063281207 ⟹ XP_063137277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,113,922 - 186,123,943 (-)	NCBI


Protein RefSeqs	NP_001386707	(Get FASTA)	NCBI Sequence Viewer
	NP_001386708	(Get FASTA)	NCBI Sequence Viewer
	NP_001406436	(Get FASTA)	NCBI Sequence Viewer
	XP_063137272	(Get FASTA)	NCBI Sequence Viewer
	XP_063137273	(Get FASTA)	NCBI Sequence Viewer
	XP_063137274	(Get FASTA)	NCBI Sequence Viewer
	XP_063137275	(Get FASTA)	NCBI Sequence Viewer
	XP_063137276	(Get FASTA)	NCBI Sequence Viewer
	XP_063137277	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070942
	ENSRNOP00000070942.2
	ENSRNOP00000097630.1
	ENSRNOP00000103940
	ENSRNOP00000107174

Ensembl Acc Id:

ENSRNOP00000070942 ⟸ ENSRNOT00000091888

Ensembl Acc Id:

ENSRNOP00000097630 ⟸ ENSRNOT00000094373

RefSeq Acc Id:	NP_001386708 ⟸ NM_001399779
- Peptide Label:	isoform 2 precursor

RefSeq Acc Id:	NP_001386707 ⟸ NM_001399778
- Peptide Label:	isoform 1 precursor
- UniProtKB:	A0A8I6B613 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001406436 ⟸ NM_001419507
- Peptide Label:	isoform 3 precursor
- UniProtKB:	A0A0G2JZ78 (UniProtKB/TrEMBL), A0A8I6B613 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZ78-F1-model_v2	AlphaFold	A0A0G2JZ78	1-152	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-52068	BioCyc
Ensembl Genes	ENSRNOG00000059750	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000091888	ENTREZGENE
	ENSRNOT00000091888.2	UniProtKB/TrEMBL
	ENSRNOT00000094373.1	UniProtKB/TrEMBL
	ENSRNOT00000157167	ENTREZGENE
	ENSRNOT00000172841	ENTREZGENE
InterPro	DUF4634	UniProtKB/TrEMBL
NCBI Gene	C2H1orf54	ENTREZGENE
PANTHER	CHROMOSOME 1 OPEN READING FRAME 54	UniProtKB/TrEMBL
	PTHR37870	UniProtKB/TrEMBL
Pfam	DUF4634	UniProtKB/TrEMBL
PhenoGen	C2h1orf54	PhenoGen
RatGTEx	ENSRNOG00000059750	RatGTEx
UniProt	A0A0G2JZ78	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B613	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-01-09	C2h1orf54	similar to human chromosome 1 open reading frame 54	C2H1orf54	chromosome 2 C1orf54 homolog	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-06-02	C2H1orf54	chromosome 2 C1orf54 homolog	AC141102.1		Data merged from RGD:15012798	737654	PROVISIONAL
2021-01-27	C2H1orf54	chromosome 2 C1orf54 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL
2019-11-08	AC141102.1				Symbol and Name status set to provisional	45752	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar