Zfp658l1 (zinc finger protein 658-like 1) - Rat Genome Database

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Gene: Zfp658l1 (zinc finger protein 658-like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp658l1
Name: zinc finger protein 658-like 1
RGD ID: 2324613
Description: Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF788P (zinc finger family member 788, pseudogene).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inhibitor of four 1; LOC100363068; LOC100366030; LOC102554485; rCG37858-like; zinc finger protein 14-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,194,182 - 5,242,944 (-)NCBIGRCr8
mRatBN7.2144,889,486 - 4,938,248 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl144,869,196 - 4,938,277 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx144,833,560 - 4,882,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,133,754 - 6,183,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0144,835,576 - 4,884,929 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,101,453 - 6,148,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,101,457 - 6,148,925 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,192,692 - 6,201,002 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0146,082,446 - 6,129,918 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4145,997,249 - 6,046,037 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera145,029,838 - 5,078,886 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp658l1Ratregulation of DNA-templated transcription involved_inIEAInterPro:IPR001909|InterPro:IPR0360511600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp658l1Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:16904636  



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Variants in Zfp658l1
385 total Variants

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:91
Interacting mature miRNAs:93
Transcripts:ENSRNOT00000049165, ENSRNOT00000075091
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat

1 to 10 of 11 rows
RH129250  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2144,891,932 - 4,892,124 (+)MAPPERmRatBN7.2
Rnor_6.0146,103,900 - 6,104,091NCBIRnor6.0
Rnor_5.0146,084,893 - 6,085,084UniSTSRnor5.0
RGSC_v3.4145,999,692 - 5,999,883UniSTSRGSC3.4
Celera145,032,285 - 5,032,476UniSTS
RH 3.4 Map1487.5UniSTS




alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
11 44 125 92 84 60 12 60 11 193 77 102 45 68 24



Ensembl Acc Id: ENSRNOT00000049165   ⟹   ENSRNOP00000039029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl146,192,692 - 6,201,002 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075091   ⟹   ENSRNOP00000065425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl144,869,196 - 4,938,277 (-)Ensembl
Rnor_6.0 Ensembl146,140,190 - 6,148,830 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092683   ⟹   ENSRNOP00000075802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl144,889,375 - 4,938,277 (-)Ensembl
Rnor_6.0 Ensembl146,101,457 - 6,148,925 (-)Ensembl
RefSeq Acc Id: NM_001177909   ⟹   NP_001171380
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8145,194,182 - 5,242,944 (-)NCBI
mRatBN7.2144,889,486 - 4,938,248 (-)NCBI
Rnor_6.0146,101,453 - 6,148,925 (-)NCBI
Rnor_5.0146,082,446 - 6,129,918 (-)NCBI
Celera145,029,838 - 5,078,886 (-)NCBI
Sequence:
Protein RefSeqs NP_001171380 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO92640 (Get FASTA)   NCBI Sequence Viewer  
  EDL99479 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065425.2
  ENSRNOP00000075802
  ENSRNOP00000075802.1
RefSeq Acc Id: NP_001171380   ⟸   NM_001177909
- UniProtKB: F1LX67 (UniProtKB/TrEMBL),   A6K5Q9 (UniProtKB/TrEMBL),   Q80V39 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075802   ⟸   ENSRNOT00000092683
Ensembl Acc Id: ENSRNOP00000065425   ⟸   ENSRNOT00000075091
Ensembl Acc Id: ENSRNOP00000039029   ⟸   ENSRNOT00000049165
KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-F1LX67-F1-model_v2 AlphaFold F1LX67 1-74 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-16524 BioCyc
Ensembl Genes ENSRNOG00000047293 Ensembl
  ENSRNOG00000049446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075091.2 UniProtKB/TrEMBL
  ENSRNOT00000092683 ENTREZGENE
  ENSRNOT00000092683.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2-type UniProtKB/TrEMBL
KEGG Report rno:100366030 UniProtKB/TrEMBL
NCBI Gene 100366030 ENTREZGENE
PANTHER RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen Zfp658l1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047293 RatGTEx
  ENSRNOG00000049446 RatGTEx
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
UniProt A6K5Q9 ENTREZGENE, UniProtKB/TrEMBL
  F1LX67 ENTREZGENE, UniProtKB/TrEMBL
  M0R7J6_RAT UniProtKB/TrEMBL
  Q80V39 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp658l1  zinc finger protein 658-like 1  LOC100366030  rCG37858-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100366030  rCG37858-like  LOC102554485  zinc finger protein 14-like  Data merged from RGD:7721775 737654 PROVISIONAL
2015-07-29 LOC100366030  rCG37858-like  LOC100363068  rCG37858-like  Data merged from RGD:2324821 737654 PROVISIONAL
2013-12-18 LOC102554485  zinc finger protein 14-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-12 LOC100363068  rCG37858-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100366030  rCG37858-like      Symbol and Name status set to provisional 70820 PROVISIONAL