Patel14l2 (prostate and testis expressed 14-like 2) - Rat Genome Database

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Gene: Patel14l2 (prostate and testis expressed 14-like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Patel14l2
Name: prostate and testis expressed 14-like 2
RGD ID: 2324268
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100362690; LOC100912443; LOC103693042; rCG64164-like; secreted seminal-vesicle Ly-6 protein 1-like; spleen protein 3; uncharacterized LOC103693042; uncharacterized protein LOC100362690
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8843,021,677 - 43,023,064 (+)NCBIGRCr8
mRatBN7.2834,764,000 - 34,765,387 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl834,764,000 - 34,765,387 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx838,829,307 - 38,830,694 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0837,112,359 - 37,113,746 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0834,975,217 - 34,976,604 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0838,240,206 - 38,241,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl838,240,206 - 38,241,593 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0838,252,137 - 38,253,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4836,216,384 - 36,217,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera836,147,947 - 36,149,334 (+)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:95
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000030635
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 51 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815442692818Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat

1 to 10 of 51 rows



ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
nervous system
renal system
reproductive system
6 21 21 21 21 29 6 8 12


RefSeq Transcripts NM_001256149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide HQ840742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000030635   ⟹   ENSRNOP00000037302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl834,764,000 - 34,765,387 (+)Ensembl
Rnor_6.0 Ensembl838,240,206 - 38,241,593 (+)Ensembl
RefSeq Acc Id: NM_001256149   ⟹   NP_001243078
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8843,021,677 - 43,023,064 (+)NCBI
mRatBN7.2834,764,000 - 34,765,387 (+)NCBI
Rnor_6.0838,240,206 - 38,241,593 (+)NCBI
Rnor_5.0838,252,137 - 38,253,524 (+)NCBI
Celera836,147,947 - 36,149,334 (+)NCBI
Sequence:
Protein RefSeqs NP_001243078 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADX20704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037302.1
RefSeq Acc Id: NP_001243078   ⟸   NM_001256149
- Peptide Label: precursor
- UniProtKB: D3ZX59 (UniProtKB/TrEMBL),   A6JYM0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037302   ⟸   ENSRNOT00000030635

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZX59-F1-model_v2 AlphaFold D3ZX59 1-99 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 11 of 11 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-31146 BioCyc
Ensembl Genes ENSRNOG00000046489 Ensembl
  ENSRNOG00000063953 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030635.2 UniProtKB/TrEMBL
KEGG Report rno:100362690 UniProtKB/TrEMBL
NCBI Gene 100362690 ENTREZGENE
PhenoGen Patel14l2 PhenoGen
RatGTEx ENSRNOG00000046489 RatGTEx
  ENSRNOG00000063953 RatGTEx
UniProt A6JYM0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZX59 ENTREZGENE, UniProtKB/TrEMBL
1 to 11 of 11 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Patel14l2  prostate and testis expressed 14-like 2  LOC100362690  rCG64164-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100362690  rCG64164-like  LOC103693042  uncharacterized LOC103693042  Data merged from RGD:9139521 737654 PROVISIONAL
2015-07-29 LOC103693042  uncharacterized LOC103693042  LOC100912443  secreted seminal-vesicle Ly-6 protein 1-like  Data merged from RGD:6486965 737654 PROVISIONAL
2014-08-25 LOC103693042  uncharacterized LOC103693042      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100912443  secreted seminal-vesicle Ly-6 protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100362690  rCG64164-like      Symbol and Name status set to provisional 70820 PROVISIONAL