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Gene: Rpap1 (RNA polymerase II associated protein 1) Rattus norvegicus

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Symbol:

Rpap1

Name:

RNA polymerase II associated protein 1

RGD ID:

1590891

Description:

Predicted to enable DNA binding activity and nucleotidyltransferase activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of DNA-directed RNA polymerase complex. Orthologous to human RPAP1 (RNA polymerase II associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

RNA polymerase II-associated protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPAP1 (RNA polymerase II associated protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rpap1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rpap1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPAP1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPAP1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpap1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPAP1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPAP1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpap1 (RNA polymerase II associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRELID3A (PRELI domain containing 3A)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RPAP1 (RNA polymerase II associated protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rpap1 (RNA polymerase II associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rpap1 (RNA polymerase II associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RBA50	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG32104	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F56B3.4	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rpap1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	127,200,450 - 127,221,985 (-)	NCBI		GRCr8
mRatBN7.2	3	106,746,642 - 106,768,182 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,656,742 - 106,768,151 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,421,921 - 110,443,407 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	119,017,469 - 119,038,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,677,861 - 116,699,347 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,565,646 - 111,587,184 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,565,650 - 111,587,151 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,278,216 - 106,299,720 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	105,657,541 - 105,679,027 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpap1	Rat	Bloom syndrome		ISO	RGD:1342806	8554872	ClinVar Annotator: match by term: Bloom syndrome	ClinVar	PMID:28492532
Rpap1	Rat	colorectal cancer		ISO	RGD:1342806	8554872	ClinVar Annotator: match by term: Familial colorectal cancer	ClinVar	PMID:28492532
Rpap1	Rat	mosaic variegated aneuploidy syndrome 1		ISO	RGD:1342806	8554872	ClinVar Annotator: match by term: Mosaic variegated aneuploidy syndrome 1	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpap1	Rat	(-)-epigallocatechin 3-gallate	decreases expression	ISO	RGD:1342806	6480464	epigallocatechin gallate results in decreased expression of RPAP1 protein	CTD	PMID:31195006
Rpap1	Rat	1,2-dichloroethane	increases expression	ISO	RGD:1557494	6480464	ethylene dichloride results in increased expression of RPAP1 mRNA	CTD	PMID:28189721\|PMID:28960355
Rpap1	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	RGD:1557494	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of RPAP1 mRNA	CTD	PMID:22206623
Rpap1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1557494	6480464	Tetrachlorodibenzodioxin affects the expression of RPAP1 mRNA	CTD	PMID:21570461
Rpap1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RPAP1 mRNA	CTD	PMID:33387578
Rpap1	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2,4-dinitrotoluene affects the expression of RPAP1 mRNA	CTD	PMID:21346803
Rpap1	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2,6-dinitrotoluene affects the expression of RPAP1 mRNA	CTD	PMID:21346803
Rpap1	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	RGD:1557494	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of RPAP1 mRNA	CTD	PMID:26251327
Rpap1	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of RPAP1 mRNA	CTD	PMID:24780913
Rpap1	Rat	acrolein	multiple interactions	ISO	RGD:1342806	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] affects the expression of RPAP1 more ...	CTD	PMID:32699268\|PMID:32845096
Rpap1	Rat	aflatoxin B1	increases expression	ISO	RGD:1557494	6480464	Aflatoxin B1 results in increased expression of RPAP1 mRNA	CTD	PMID:19770486
Rpap1	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1342806	6480464	Aflatoxin B1 results in decreased methylation of RPAP1 exon	CTD	PMID:30157460
Rpap1	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	RGD:1342806	6480464	aflatoxin B2 results in decreased methylation of RPAP1 exon	CTD	PMID:30157460
Rpap1	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1342806	6480464	Tretinoin results in decreased expression of RPAP1 mRNA	CTD	PMID:33167477
Rpap1	Rat	alpha-pinene	multiple interactions	ISO	RGD:1342806	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] affects the expression of RPAP1 more ...	CTD	PMID:32699268
Rpap1	Rat	aristolochic acid A	increases expression	ISO	RGD:1342806	6480464	aristolochic acid I results in increased expression of RPAP1 mRNA	CTD	PMID:33212167
Rpap1	Rat	atrazine	decreases expression	ISO	RGD:1342806	6480464	Atrazine results in decreased expression of RPAP1 mRNA	CTD	PMID:22378314
Rpap1	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1557494	6480464	Benzo(a)pyrene results in increased expression of RPAP1 mRNA	CTD	PMID:22228805
Rpap1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1342806	6480464	Benzo(a)pyrene affects the methylation of RPAP1 exon	CTD	PMID:30157460
Rpap1	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	RGD:1557494	6480464	Diethylhexyl Phthalate results in increased expression of RPAP1 mRNA	CTD	PMID:34319233
Rpap1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RPAP1 mRNA	CTD	PMID:30816183\|PMID:32528016
Rpap1	Rat	bisphenol A	increases expression	ISO	RGD:1557494	6480464	bisphenol A results in increased expression of RPAP1 mRNA	CTD	PMID:33221593
Rpap1	Rat	CGP 52608	multiple interactions	ISO	RGD:1342806	6480464	CGP 52608 promotes the reaction [RORA protein binds to RPAP1 gene]	CTD	PMID:28238834
Rpap1	Rat	cisplatin	decreases expression	ISO	RGD:1342806	6480464	Cisplatin results in decreased expression of RPAP1 mRNA	CTD	PMID:27594783
Rpap1	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1342806	6480464	Copper Sulfate results in decreased expression of RPAP1 mRNA	CTD	PMID:19549813
Rpap1	Rat	coumarin	increases phosphorylation	ISO	RGD:1342806	6480464	coumarin results in increased phosphorylation of RPAP1 protein	CTD	PMID:35688186
Rpap1	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1342806	6480464	di-n-butylphosphoric acid affects the expression of RPAP1 mRNA	CTD	PMID:37042841
Rpap1	Rat	dibutyl phthalate	decreases expression	ISO	RGD:1557494	6480464	Dibutyl Phthalate results in decreased expression of RPAP1 mRNA	CTD	PMID:21266533
Rpap1	Rat	dicrotophos	increases expression	ISO	RGD:1342806	6480464	dicrotophos results in increased expression of RPAP1 mRNA	CTD	PMID:28302478
Rpap1	Rat	ethanol	affects splicing	ISO	RGD:1557494	6480464	Ethanol affects the splicing of RPAP1 mRNA	CTD	PMID:30319688
Rpap1	Rat	ferroheme b	decreases expression	ISO	RGD:1557494	6480464	Heme metabolite results in decreased expression of RPAP1 mRNA	CTD	PMID:19191707
Rpap1	Rat	folic acid	multiple interactions	ISO	RGD:1557494	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of RPAP1 mRNA	CTD	PMID:22206623
Rpap1	Rat	FR900359	decreases phosphorylation	ISO	RGD:1342806	6480464	FR900359 results in decreased phosphorylation of RPAP1 protein	CTD	PMID:37730182
Rpap1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of RPAP1 mRNA	CTD	PMID:33387578
Rpap1	Rat	heme b	decreases expression	ISO	RGD:1557494	6480464	Heme metabolite results in decreased expression of RPAP1 mRNA	CTD	PMID:19191707
Rpap1	Rat	inulin	multiple interactions	ISO	RGD:1557494	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of RPAP1 mRNA	CTD	PMID:36331819
Rpap1	Rat	ivermectin	decreases expression	ISO	RGD:1342806	6480464	Ivermectin results in decreased expression of RPAP1 protein	CTD	PMID:32959892
Rpap1	Rat	ozone	multiple interactions	ISO	RGD:1342806	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] affects the expression of RPAP1 more ...	CTD	PMID:32699268\|PMID:32845096
Rpap1	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1557494	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of RPAP1 mRNA	CTD	PMID:36331819
Rpap1	Rat	potassium dichromate	increases expression	ISO	RGD:1342806	6480464	Potassium Dichromate results in increased expression of RPAP1 protein	CTD	PMID:23718831
Rpap1	Rat	quercetin	increases expression	ISO	RGD:1342806	6480464	Quercetin results in increased expression of RPAP1 mRNA	CTD	PMID:21632981
Rpap1	Rat	T-2 toxin	increases expression	ISO	RGD:1342806	6480464	T-2 Toxin results in increased expression of RPAP1 mRNA	CTD	PMID:34581912
Rpap1	Rat	testosterone	increases expression	ISO	RGD:1342806	6480464	Testosterone results in increased expression of RPAP1 mRNA	CTD	PMID:33359661
Rpap1	Rat	triphenyl phosphate	affects expression	ISO	RGD:1342806	6480464	triphenyl phosphate affects the expression of RPAP1 mRNA	CTD	PMID:37042841
Rpap1	Rat	triptonide	increases expression	ISO	RGD:1557494	6480464	triptonide results in increased expression of RPAP1 mRNA	CTD	PMID:33045310
Rpap1	Rat	tungsten	decreases expression	ISO	RGD:1557494	6480464	Tungsten results in decreased expression of RPAP1 mRNA	CTD	PMID:30912803
Rpap1	Rat	valproic acid	increases methylation	ISO	RGD:1342806	6480464	Valproic Acid results in increased methylation of RPAP1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpap1	Rat	transcription by RNA polymerase II	involved_in	IEA	InterPro:IPR039913	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpap1	Rat	DNA-directed RNA polymerase complex	part_of	IEA	UniProtKB-KW:KW-0240	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rpap1	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rpap1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rpap1	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rpap1	Rat	nucleotidyltransferase activity	enables	IEA	UniProtKB-KW:KW-0548	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rpap1	Rat	protein binding	enables	ISO	RGD:1342806	1624291	UniProtKB:P62875\|UniProtKB:Q9NUX5 PMID:21044950, PMID:25416956, PMID:33961781	RGD	PMID:21044950\|PMID:25416956\|PMID:33961781
Rpap1	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:12477932

Rpap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	127,200,450 - 127,221,985 (-)	NCBI		GRCr8
mRatBN7.2	3	106,746,642 - 106,768,182 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,656,742 - 106,768,151 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	110,421,921 - 110,443,407 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	119,017,469 - 119,038,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,677,861 - 116,699,347 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,565,646 - 111,587,184 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,565,650 - 111,587,151 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	106,278,216 - 106,299,720 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	105,657,541 - 105,679,027 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

RPAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	41,517,176 - 41,544,257 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	41,517,176 - 41,544,269 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	41,809,374 - 41,836,455 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	39,596,666 - 39,623,756 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	39,596,668 - 39,623,756	NCBI
Celera	15	18,577,327 - 18,604,438 (-)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	18,657,583 - 18,684,881 (-)	NCBI		HuRef
CHM1_1	15	41,927,941 - 41,955,030 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	39,323,327 - 39,350,423 (-)	NCBI		T2T-CHM13v2.0

Rpap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,594,440 - 119,618,018 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,593,785 - 119,618,018 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	119,763,959 - 119,787,537 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,763,304 - 119,787,537 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	119,589,695 - 119,613,273 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	119,455,405 - 119,478,939 (-)	NCBI		MGSCv36	mm8
Celera	2	120,920,580 - 120,943,743 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.97	NCBI

Rpap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	8,317,814 - 8,349,007 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	8,322,239 - 8,348,331 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	30,758,564 - 30,786,458 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	34,909,810 - 34,937,702 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	20,457,993 - 20,485,371 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	38,698,454 - 38,724,730 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	38,698,454 - 38,724,730 (-)	Ensembl	panpan1.1		panPan2

RPAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	8,553,148 - 8,571,079 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	8,553,158 - 8,570,993 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	8,611,972 - 8,629,884 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	8,687,413 - 8,705,339 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	8,687,413 - 8,705,290 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	8,608,687 - 8,626,589 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	8,716,055 - 8,734,039 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,847,863 - 8,865,778 (-)	NCBI		UU_Cfam_GSD_1.0

Rpap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	87,012,267 - 87,039,288 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,860,291 - 4,887,540 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	4,860,327 - 4,887,283 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	129,838,585 - 129,857,041 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	129,838,556 - 129,857,038 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	144,910,412 - 144,928,848 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	41,457,696 - 41,488,315 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	41,457,725 - 41,488,314 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	99,492,826 - 99,520,423 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	8,675,366 - 8,690,857 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624804	8,674,099 - 8,698,333 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rpap1
62 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	45
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000007299
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

RH129870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,746,704 - 106,746,916 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	111,565,709 - 111,565,920	NCBI	Rnor6.0
Rnor_5.0	3	118,114,169 - 118,114,380	UniSTS	Rnor5.0
RGSC_v3.4	3	106,278,275 - 106,278,486	UniSTS	RGSC3.4
Celera	3	105,657,600 - 105,657,811	UniSTS
RH 3.4 Map	3	916.8	UniSTS
Cytogenetic Map	3	q35	UniSTS

AW107702

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	106,746,972 - 106,747,065 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	111,565,977 - 111,566,069	NCBI	Rnor6.0
Rnor_5.0	3	118,114,437 - 118,114,529	UniSTS	Rnor5.0
RGSC_v3.4	3	106,278,543 - 106,278,635	UniSTS	RGSC3.4
Celera	3	105,657,868 - 105,657,960	UniSTS
Cytogenetic Map	3	q35	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001033999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB328668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR475672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007299 ⟹ ENSRNOP00000007299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,656,742 - 106,768,151 (-)	Ensembl
Rnor_6.0 Ensembl	3	111,565,650 - 111,587,151 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112463 ⟹ ENSRNOP00000095239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,656,742 - 106,768,151 (-)	Ensembl

RefSeq Acc Id:

NM_001033999 ⟹ NP_001029171

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,200,450 - 127,221,952 (-)	NCBI
mRatBN7.2	3	106,746,646 - 106,768,151 (-)	NCBI
Rnor_6.0	3	111,565,650 - 111,587,151 (-)	NCBI
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI
RGSC_v3.4	3	106,278,216 - 106,299,720 (-)	RGD
Celera	3	105,657,541 - 105,679,027 (-)	RGD

Sequence:

show sequence

GATGGCGGCGCCCAGGCCGGTCTTGTTCGAGTAGGTTGCTGTTTGCAGGGACCCGCTTCAAGTTACTCAGACGCTGGCGATCCAGGATGCTTAACTAGATCCTTCGGCGCAGTCTCCGGACAGGTCGT
GTGGCCAATAGGCTGCGGTGTAAGAGGCTATTCCAAAATCCAGCAAATCCAATGAGTGAATGAGAGGAATTCTCTTCACCAACAACGCAGTACTGGAAGGAGTCATCCACAGTTCACAGCTCCAGGGT
CATGATGTTGTCCAGACCGAAGCCTGGAGAGTCTGAGGTGGACCTACTGCGCTTCCAAAGTCAGTTCCTCGAGGCTGGTGCAGCTCCAGCGGTGCAGCTGGTGAAAGGGAGTAGGAGGCGTGGTGATG
CGCATCCAGACCAGCTCCCCCCACAGGACCATCGGGATGTGGTGATGCTGGACAGTCTCCCAGATTTGCCCCCGGCTCTGCTTCCTGCTCCTTCCAAGAGAGCTAGACCAAGCCCTGGCCGCCCCCTG
CCTCACGATGAAGACCCTGAGGAGAGGCTGAACAGACACGATGAGCACATCACTGCTGTTTTGTCTAAGATTGTTGAACGGGATACAAGTTCAGTTACTGTGACTCTGCCTGTGCCCAGTGGTGTGGC
TTTCCCCCCTGTGTTCCACCGCTCTCAGGAGAGACAGGTGAAACCAGCAGCATCTAGTAAAAGGAGCATCTTTGCCCAAGAGATTGCAGCAAGGAGGGTGTCAGACAACAGGGCACCATCAGCTGAGC
AAGTTGTCCCCAGCCCAGATGCACCAGAGGGTGCCGTGCCCTGTGAAACACCCTCCTCTAAGGACAGAGGCAGCCAGCTTCCTGGGAGGAGCCATAGCTTCCACAGACCAAATCTAATCACAGGAAAG
GGGCTCAGGAGCCAGGCGGCTGTGCAGGAGGTCCAGACCATCCATGAAGAGAATGTAGCAAGACTACAAGCCATGGATCCTGAGGAGATCCTGAAGGAGCAGCAGCAGTTACTGGCTCAACTTGACCC
CAGCTTGGTTGCCTTCTTGAGAGCTCATAACCATACCCGGGAGCAAACAGAAACAAAAGCCACCAAGGAGCAGAACCCAGAAAGGCCCTCAGTTCCTGTCAGTAAAGAAGAGCCCATCATGTCAACAT
GTACCGGGGAGTCTGGGACCAGGGACAAGCTGGAGGACAAGTTGGAGGACAAGCTGCAGCCAAGAACCCCAGCACTGAAGCTCCCCATGACCCCCAACAAAGAATGGCTCCATATGGACACCGTAGAG
CTGGAGAAGCTCCACTGGACCCAGGACCTGCCACCGCTCCGGCGGCAGCAGACACAGGAGAGAATGCAGGCTCGATTCAGCCTTCAGGGAGAGCTCCTGGAGCCTGATGTGGATCTGCCCACACATCT
GGGCCTGCACCACCACGGAGAAGAGGCAGAGAGAGCAGGGTACTCTCTACAGGAGCTGTTCCACCTGACCCGTAGCCAGGTATCCCAGCAGAGAGCACTGGCATTGCATGTGTTGTCCCACATCGTCG
GCAGGGCCCAGGCTGGTGAGTTTGGGGACCGTCTAGTGGGCAGTGTCTTGCGCCTCCTCTTGGATGCTGGCTTCCTCTTCCTGCTGCGCTTCTCTCTGGATGACAGGATAGACAGCGTCATTGCAGCA
GCTGTCCGAGCTCTTCGTGCTCTGCTGGTTGCTCCTGGAGATGAGGAGCTCCTTGACAGCACCTTCTCTTGGTATCATGGAGCTTCAGTGTTCCCTATGATGCCCAGCCACGACGATAAAGAGGATGA
AGATGAGGACGAAGAACTCACAAAAGAAAAGGTGAATCGAAAGACCCCTGAGGAAGGAAGCCGCCCTCCACCCGACCTGGCCAGACATGATGTCATCAAGGGTCTTCTGGCTACCAACCTGCTGCCTC
GGTTCCGCTATGTGCTGGAGGTGACCTGCCCAGGGCCCTCTGTGGTCCTTGACATCCTGGCTGTGCTTATACGCCTGGCCCGGCATTCCCTGGAGTCAGCCATGAGGGTCCTGGAGTGTCCTCGGCTG
ATGGAGACCATAGTTCGGGAGTTCTTGCCGACCAGTTGGTCCCCTATAGGGGTGGGGCCTGCTCCCAGTCTATATAAAGTGCCTTGTGCTGCTGCCATGAAACTACTCAGGGTCCTGGCCTCAGCTGG
GAGGAATATCGCTGCCCGACTGCTAAGCAGCTTTGATGTCAGGAGCCGACTGTGCCGATTCATAGCTGAAGCACCACGTGACCTGGCCTTGCCATTCGAAGAAGCAGAGATCCTGACAACTGAGGCCT
TCCGTCTCTGGGCCGTGGCTGCCTCCTATGGCCAGGGTGGTGACCTTTACAGGGAGCTGTACCCAGTGCTCATGCGGGCCCTGCAGACACTGCCTCCAGAGCTCAGCACTCATCCCCTGCAGCCCCTG
TCCATGCAGCGGATGGCCTCTCTGCTCACTCTGCTCACCCAGCTGACCCTGGCAGCTAGCACACAGCCTGAGGCCACCAGTGGCTCTGTCGAGTCCTGTGTGGTGGCCATCCCTTCCTCAATCACCTG
GACACATGTATCTGGACTCAAGCCACTGGTTGAGCCATGTCTAAAGCAGACCCTAAAGTTTCTGCGCAGACCTGATGTGTGGAATGCCCTGGGTCCGGTGCCTAGTGCCTGCCTTCTGTTCTTGGGTG
CTTACTATCAGACCTGGAGCCAGCAGTCAGGCTTGTGCCCAGAGGATTGGCTTCAGGACATGGAACGCTTTTTGGATGAATTCTTGCTGCCACTGCTGAGCCAGCCTCCTTTGGGCAGGATGTGGGAT
TCCTTAAGGGACTGCTCCCCGCTCTGCAATCCGCTGTCCTGTGCTTCCACCCCTGAAGCTCTCCCCAGCCTCGTGTCACTAGGCTGTGCAGGAGGCTGTCCCCCTCTCAGTGTGGCTGGCTCAGCCTC
ACCCTTCCCATTCCTCACTGCCCTCCTCTCTCTTATCAACACTCTGGGCCAGATCCACAAGGGGCTTTGCAGACAGCTGGCTGTTGTGTTGACTGCCCCAGGACTCCAGAACTACTTTCTCCAGTGTG
TGGCTCCTGCACCTGCGCCACAGCTCACACCCTTCTCTGCCTGGGCCCTGCGCCATGAGTACCACCTACAGTACCTGGTGCTTTCCCTAGCCCAGAAAGCGGCAACATCGCAGCCAGAGCCAGCTGCC
AGCACTGCCCTCCATCATGTTATGGCCCTGGTCCTGCTGAGCCGGCTGCTGCCTGGAAGTGAATTCCTCGCCCACGAGCTGCTGCTGAGCTGTGTGTTCCGGCTGGGGTTCCTGCCGGAAAATGCTTC
AGGTGGTCCAGAGGCAGCTGACTTCTCTGATGGGCTGTCCTTAGGGAACAGTGGGGACCCTCACTGTAGACGAGGGGCTCTCCTAGTTCAAGCTTGCCAGGATCTCCCCAGCATCCGCAGCTGCTACC
TGGCCCATTGTTCACCAGCTCGAGCCAGTCTGCTGACCTCCCAAGCGTTGTACCGTGGAGAGCTGCCGAGAGTCTCAAGTCTGCTGCTGCCTGTACCTAAGGAGCCACTGCTGCCCACTGACTGGCCC
TTCCAGCCGCTGATCCATCTCTACCACCGAGCTTCAGATACTCCCTCTGGGCTGCCTGCTGCTGACACTGTAGGCATCACCATGCGGGTCCTACAGTGGGTGCTAGTTCTGGAGAGCTGGCGCCCTGA
GGCCCTCTGGGCTGTGCCCCCTGCTGCCCGCCTGGCACGTCTCATGTGTGTGTACCTGGTGGATAGCGAGCTTTTTCGAGAGACTCCCATACAACGTCTAGTGGCTGCTCTTTTAGCTCGGCTCTGTC
AGCCCCAAGTCTTGCCAAACCTCAAGCTGGACTGCCCCCTCCCTGGCCTGACCTCCTTTCCTGACCTCTATGCCAGCTTCTTAGACCACTTTGAGGCCGTCTCATTTGGAGACCACTTGTTTGGGGCT
CTGGTCCTCCTTCCTCTGCAGCGCCGGTTCAGTGTCACCTTGCGCCTTGCCCTCTTTGGGGAGCATGTGGGAGTATTGCGAGCACTTGGCCTGCCTCTGGCTCAGCTGCCTGTGCCTCTGGAGTGCTA
CACAGAGCCTGCTGAAGACAGCCTGGCTCTCCTTCAGCTCTACTTCCGGGCCCTGGTTACTGGTGCACTCCATGCACGTTGGTGCCCCGTCCTCTACACTGTAGCTGTGGCTCATGTCAATAGTTTCG
TCTTCTGCCAGGACCCAAAGAGCTCAGATGAGGTGAAGGCTGCCCGAAGGAGTATGCTGCAGAAGGTGTGGCTACTGGCAGACAAGGATCTGCGGCAGCATCTCCTTCACTATAAACTCCCCAACTCC
AGCCTCCCAGAAGGCTTTGAACTGTATCCCCAGTTACCTCGCCTGAGGCAGCAGTACCTTCAGACGCTGCCCACAGAGGTGCTCCAGAACGGAGGATTCAAGACATAGGGCACTTGCCCCAGCTAAAG
ATGAACTAAAGATGAGCTAAAGATTCATTCTCCTGAGGCTTCCCGGTGCACATCATGAGAGAAACACAAGCTTGCCTTCCTTCCTGTGAGCACATCGAGCCTCTTCTTTTAGAACAGAAGGAACTCAT
ATTACATTATGATACTGCAGCTCAGGACCTGGGAGCTCTGAGGGCTGTGCTAGGAGTGACTTCAATGTTTCCCCTGCGGTGGCCCAGGACAGTCTGAGCACAGCTCTTCTCACCACCTCCCATCTTTA
CCAGGTCAGGGTGTGTGATTGCTGTGCTACGCCCTGAAATAAAATTCTTTTCTAGTCTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234771 ⟹ XP_006234833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,200,450 - 127,221,985 (-)	NCBI
mRatBN7.2	3	106,746,642 - 106,768,182 (-)	NCBI
Rnor_6.0	3	111,565,646 - 111,587,184 (-)	NCBI
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI

Sequence:

show sequence

AGCGGCGGCGGAAGTGCCGCTCCGCACGGCTAAGATGGCGGCGCCCAGGCCGGTCTTGTTCGAGTAGGTTGCTGTTTGCAGGGACCCGCTTCAAGTTACTCAGGTGGAGAACCCAGAAGCAAGACGCT
GGCGATCCAGGATGCTTAACTAGATCCTTCGGCGCAGTCTCCGGACAGGTCGTGTGGCCAATAGGCTGCGGTGTAAGAGGCTATTCCAAAATCCAGCAAATCCAATGAGTGAATGAGAGGAATTCTCT
TCACCAACAACGCAGTACTGGAAGGAGTCATCCACAGTTCACAGCTCCAGGGTCATGATGTTGTCCAGACCGAAGCCTGGAGAGTCTGAGGTGGACCTACTGCGCTTCCAAAGTCAGTTCCTCGAGGC
TGGTGCAGCTCCAGCGGTGCAGCTGGTGAAAGGGAGTAGGAGGCGTGGTGATGCGCATCCAGACCAGCTCCCCCCACAGGACCATCGGGATGTGGTGATGCTGGACAGTCTCCCAGATTTGCCCCCGG
CTCTGCTTCCTGCTCCTTCCAAGAGAGCTAGACCAAGCCCTGGCCGCCCCCTGCCTCACGATGAAGACCCTGAGGAGAGGCTGAACAGACACGATGAGCACATCACTGCTGTTTTGTCTAAGATTGTT
GAACGGGATACAAGTTCAGTTACTGTGACTCTGCCTGTGCCCAGTGGTGTGGCTTTCCCCCCTGTGTTCCACCGCTCTCAGGAGAGACAGGTGAAACCAGCAGCATCTAGTAAAAGGAGCATCTTTGC
CCAAGAGATTGCAGCAAGGAGGGTGTCAGACAACAGGGCACCATCAGCTGAGCAAGTTGTCCCCAGCCCAGATGCACCAGAGGGTGCCGTGCCCTGTGAGACACCCTCCTCTAAGGACAGAGGCAGCC
AGCTTCCTGGGAGGAGCCATAGCTTCCACAGACCAAATCTAATCACAGGAAAGGGGCTCAGGAGCCAGGCGGCTGTGCAGGAGGTCCAGACCATCCATGAAGAGAATGTAGCAAGACTACAAGCCATG
GATCCTGAGGAGATCCTGAAGGAGCAGCAGCAGTTACTGGCTCAACTTGACCCCAGCTTGGTTGCCTTCTTGAGAGCTCATAACCATACCCGGGAGCAAACAGAAACAAAAGCCACCAAGGAGCAGAA
CCCAGAAAGGCCCTCAGTTCCTGTCAGTAAAGAAGAGCCCATCATGTCAACATGTACCGGGGAGTCTGGGACCAGGGACAAGCTGGAGGACAAGTTGGAGGACAAGCTGCAGCCAAGAACCCCAGCAC
TGAAGCTCCCCATGACCCCCAACAAAGAATGGCTCCATATGGACACCGTAGAGCTGGAGAAGCTCCACTGGACCCAGGACCTGCCACCGCTCCGGCGGCAGCAGACACAGGAGAGAATGCAGGCTCGA
TTCAGCCTTCAGGGAGAGCTCCTGGAGCCTGATGTGGATCTGCCCACACATCTGGGCCTGCACCACCACGGAGAAGAGGCAGAGAGAGCAGGGTACTCTCTACAGGAGCTGTTCCACCTGACCCGTAG
CCAGGTATCCCAGCAGAGAGCACTGGCATTGCATGTGTTGTCCCACATCGTCGGCAGGGCCCAGGCTGGTGAGTTTGGGGACCGTCTAGTGGGCAGTGTCTTGCGCCTCCTCTTGGATGCTGGCTTCC
TCTTCCTGCTGCGCTTCTCTCTGGATGACAGGATAGACAGCGTCATTGCAGCAGCTGTCCGAGCTCTTCGTGCTCTGCTGGTTGCTCCTGGAGATGAGGAGCTCCTTGACAGCACCTTCTCTTGGTAT
CATGGAGCTTCAGTGTTCCCTATGATGCCCAGCCACGACGATAAAGAGGATGAAGATGAGGACGAAGAACTCACAAAAGAAAAGGTGAATCGAAAGACCCCTGAGGAAGGAAGCCGCCCTCCACCCGA
CCTGGCCAGACATGATGTCATCAAGGGTCTTCTGGCTACCAACCTGCTGCCTCGGTTCCGCTATGTGCTGGAGGTGACCTGCCCAGGGCCCTCTGTGGTCCTTGACATCCTGGCTGTGCTTATACGCC
TGGCCCGGCATTCCCTGGAGTCAGCCATGAGGGTCCTGGAGTGTCCTCGGCTGATGGAGACCATAGTTCGGGAGTTCTTGCCGACCAGTTGGTCCCCTATAGGGGTGGGGCCTGCTCCCAGTCTATAT
AAAGTGCCTTGTGCTGCTGCCATGAAACTACTCAGGGTCCTGGCCTCAGCTGGGAGGAATATCGCTGCCCGACTGCTAAGCAGCTTTGATGTCAGGAGCCGACTGTGCCGATTCATAGCTGAAGCACC
ACGTGACCTGGCCTTGCCATTCGAAGAAGCAGAGATCCTGACAACTGAGGCCTTCCGTCTCTGGGCCGTGGCTGCCTCCTATGGCCAGGGTGGTGACCTTTACAGGGAGCTGTACCCAGTGCTCATGC
GGGCCCTGCAGACACTGCCTCCAGAGCTCAGCACTCATCCCCTGCAGCCCCTGTCCATGCAGCGGATGGCCTCTCTGCTCACTCTGCTCACCCAGCTGACCCTGGCAGCTAGCACACAGCCTGAGGCC
ACCAGTGGCTCTGTCGAGTCCTGTGTGGTGGCCATCCCTTCCTCAATCACCTGGACACATGTATCTGGACTCAAGCCACTGGTTGAGCCATGTCTAAAGCAGACCCTAAAGTTTCTGCGCAGACCTGA
TGTGTGGAATGCCCTGGGTCCGGTGCCTAGTGCCTGCCTTCTGTTCTTGGGTGCTTACTATCAGACCTGGAGCCAGCAGTCAGGCTTGTGCCCAGAGGATTGGCTTCAGGACATGGAACGCTTTTTGG
ATGAATTCTTGCTGCCACTGCTGAGCCAGCCTCCTTTGGGCAGGATGTGGGATTCCTTAAGGGACTGCTCCCCGCTCTGCAATCCGCTGTCCTGTGCTTCCACCCCTGAAGCTCTCCCCAGCCTCGTG
TCACTAGGCTGTGCAGGAGGCTGTCCCCCTCTCAGTGTGGCTGGCTCAGCCTCACCCTTCCCATTCCTCACTGCCCTCCTCTCTCTTATCAACACTCTGGGCCAGATCCACAAGGGGCTTTGCAGACA
GCTGGCTGTTGTGTTGACTGCCCCAGGACTCCAGAACTACTTTCTCCAGTGTGTGGCTCCTGCACCTGCGCCACAGCTCACACCCTTCTCTGCCTGGGCCCTGCGCCATGAGTACCACCTACAGTACC
TGGTGCTTTCCCTAGCCCAGAAAGCGGCAACATCGCAGCCAGAGCCAGCTGCCAGCACTGCCCTCCATCATGTTATGGCCCTGGTCCTGCTGAGCCGGCTGCTGCCTGGAAGTGAATTCCTCGCCCAC
GAGCTGCTGCTGAGCTGTGTGTTCCGGCTGGGGTTCCTGCCGGAAAATGCTTCAGGTGGTCCAGAGGCAGCTGACTTCTCTGATGGGCTGTCCTTAGGGAACAGTGGGGACCCTCACTGTAGACGAGG
GGCTCTCCTAGTTCAAGCTTGCCAGGATCTCCCCAGCATCCGCAGCTGCTACCTGGCCCATTGTTCACCAGCTCGAGCCAGTCTGCTGACCTCCCAAGCGTTGTACCGTGGAGAGCTGCCGCGAGTCT
CAAGTCTGCTGCTGCCTGTACCTAAGGAGCCACTGCTGCCCACTGACTGGCCCTTCCAGCCGCTGATCCATCTCTACCACCGAGCTTCAGATACTCCCTCTGGGCTGCCTGCTGCTGACACTGTAGGC
ATCACCATGCGGGTCCTACAGTGGGTGCTAGTTCTGGAGAGCTGGCGCCCTGAGGCCCTCTGGGCTGTGCCCCCTGCTGCCCGCCTGGCACGTCTCATGTGTGTGTACCTGGTGGATAGCGAGCTTTT
TCGAGAGACTCCCATACAACGTCTAGTGGCTGCTCTTTTAGCTCGGCTCTGTCAGCCCCAAGTCTTGCCAAACCTCAAGCTGGACTGCCCCCTCCCTGGCCTGACCTCCTTTCCTGACCTCTATGCCA
GCTTCTTAGACCACTTTGAGGCCGTCTCATTTGGAGACCACTTGTTTGGGGCTCTGGTCCTCCTTCCTCTGCAGCGCCGGTTCAGTGTCACCTTGCGCCTTGCCCTCTTTGGGGAGCATGTGGGAGTA
TTGCGAGCACTTGGCCTGCCTCTGGCTCAGCTGCCTGTGCCTCTGGAGTGCTACACAGAGCCTGCTGAAGACAGCCTGGCTCTCCTTCAGCTCTACTTCCGGGCCCTGGTTACTGGTGCACTCCATGC
ACGTTGGTGCCCCGTCCTCTACACTGTAGCTGTGGCTCATGTCAATAGTTTCGTCTTCTGCCAGGACCCAAAGAGCTCAGATGAGGTGAAGGCTGCCCGAAGGAGTATGCTGCAGAAGGTGTGGCTAC
TGGCAGACAAGGATCTGCGGCAGCATCTCCTTCACTATAAACTCCCCAACTCCAGCCTCCCAGAAGGCTTTGAACTGTATCCCCAGTTACCTCGCCTGAGGCAGCAGTACCTTCAGACGCTGCCCACA
GAGGTGCTCCAGAACGGAGGATTCAAGACATAGGGCACTTGCCCCAGCTAAAGATGAACTAAAGATGAGCTAAAGATTCATTCTCCTGAGGCTTCCCGGTGCACATCATGAGAGAAACACAAGCTTGC
CTTCCTTCCTGTGAGCACATCGAGCCTCTTCTTTTAGAACAGAAGGAACTCATATTACATTATGATACTGCAGCTCAGGACCTGGGAGCTCTGAGGGCTGTGCTAGGAGTGACTTCAATGTTTCCCCT
GCGGTGGCCCAGGACAGTCTGAGCACAGCTCTTCTCACCACCTCCCATCTTTACCAGGTCAGGGTGTGTGATTGCTGTGCTACGCCCTGAAATAAAATTCTTTTCTAGTCTTACTGA

hide sequence

RefSeq Acc Id:

XM_006234772 ⟹ XP_006234834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,200,450 - 127,221,978 (-)	NCBI
mRatBN7.2	3	106,746,982 - 106,768,177 (-)	NCBI
Rnor_6.0	3	111,565,646 - 111,587,184 (-)	NCBI
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI

Sequence:

show sequence

AGCGGCGGCGGAAGTGCCGCTCCGCACGGCTAAGATGGCGGCGCCCAGGCCGGTCTTGTTCGAGTAGGTTGCTGTTTGCAGGGACCCGCTTCAAGTTACTCAGGTGGAGAACCCAGAAGCAAGGAGTG
AATGAGAGGAATTCTCTTCACCAACAACGCAGTACTGGAAGGAGTCATCCACAGTTCACAGCTCCAGGGTCATGATGTTGTCCAGACCGAAGCCTGGAGAGTCTGAGGTGGACCTACTGCGCTTCCAA
AGTCAGTTCCTCGAGGCTGGTGCAGCTCCAGCGGTGCAGCTGGTGAAAGGGAGTAGGAGGCGTGGTGATGCGCATCCAGACCAGCTCCCCCCACAGGACCATCGGGATGTGGTGATGCTGGACAGTCT
CCCAGATTTGCCCCCGGCTCTGCTTCCTGCTCCTTCCAAGAGAGCTAGACCAAGCCCTGGCCGCCCCCTGCCTCACGATGAAGACCCTGAGGAGAGGCTGAACAGACACGATGAGCACATCACTGCTG
TTTTGTCTAAGATTGTTGAACGGGATACAAGTTCAGTTACTGTGACTCTGCCTGTGCCCAGTGGTGTGGCTTTCCCCCCTGTGTTCCACCGCTCTCAGGAGAGACAGGTGAAACCAGCAGCATCTAGT
AAAAGGAGCATCTTTGCCCAAGAGATTGCAGCAAGGAGGGTGTCAGACAACAGGGCACCATCAGCTGAGCAAGTTGTCCCCAGCCCAGATGCACCAGAGGGTGCCGTGCCCTGTGAGACACCCTCCTC
TAAGGACAGAGGCAGCCAGCTTCCTGGGAGGAGCCATAGCTTCCACAGACCAAATCTAATCACAGGAAAGGGGCTCAGGAGCCAGGCGGCTGTGCAGGAGGTCCAGACCATCCATGAAGAGAATGTAG
CAAGACTACAAGCCATGGATCCTGAGGAGATCCTGAAGGAGCAGCAGCAGTTACTGGCTCAACTTGACCCCAGCTTGGTTGCCTTCTTGAGAGCTCATAACCATACCCGGGAGCAAACAGAAACAAAA
GCCACCAAGGAGCAGAACCCAGAAAGGCCCTCAGTTCCTGTCAGTAAAGAAGAGCCCATCATGTCAACATGTACCGGGGAGTCTGGGACCAGGGACAAGCTGGAGGACAAGTTGGAGGACAAGCTGCA
GCCAAGAACCCCAGCACTGAAGCTCCCCATGACCCCCAACAAAGAATGGCTCCATATGGACACCGTAGAGCTGGAGAAGCTCCACTGGACCCAGGACCTGCCACCGCTCCGGCGGCAGCAGACACAGG
AGAGAATGCAGGCTCGATTCAGCCTTCAGGGAGAGCTCCTGGAGCCTGATGTGGATCTGCCCACACATCTGGGCCTGCACCACCACGGAGAAGAGGCAGAGAGAGCAGGGTACTCTCTACAGGAGCTG
TTCCACCTGACCCGTAGCCAGGTATCCCAGCAGAGAGCACTGGCATTGCATGTGTTGTCCCACATCGTCGGCAGGGCCCAGGCTGGTGAGTTTGGGGACCGTCTAGTGGGCAGTGTCTTGCGCCTCCT
CTTGGATGCTGGCTTCCTCTTCCTGCTGCGCTTCTCTCTGGATGACAGGATAGACAGCGTCATTGCAGCAGCTGTCCGAGCTCTTCGTGCTCTGCTGGTTGCTCCTGGAGATGAGGAGCTCCTTGACA
GCACCTTCTCTTGGTATCATGGAGCTTCAGTGTTCCCTATGATGCCCAGCCACGACGATAAAGAGGATGAAGATGAGGACGAAGAACTCACAAAAGAAAAGGTGAATCGAAAGACCCCTGAGGAAGGA
AGCCGCCCTCCACCCGACCTGGCCAGACATGATGTCATCAAGGGTCTTCTGGCTACCAACCTGCTGCCTCGGTTCCGCTATGTGCTGGAGGTGACCTGCCCAGGGCCCTCTGTGGTCCTTGACATCCT
GGCTGTGCTTATACGCCTGGCCCGGCATTCCCTGGAGTCAGCCATGAGGGTCCTGGAGTGTCCTCGGCTGATGGAGACCATAGTTCGGGAGTTCTTGCCGACCAGTTGGTCCCCTATAGGGGTGGGGC
CTGCTCCCAGTCTATATAAAGTGCCTTGTGCTGCTGCCATGAAACTACTCAGGGTCCTGGCCTCAGCTGGGAGGAATATCGCTGCCCGACTGCTAAGCAGCTTTGATGTCAGGAGCCGACTGTGCCGA
TTCATAGCTGAAGCACCACGTGACCTGGCCTTGCCATTCGAAGAAGCAGAGATCCTGACAACTGAGGCCTTCCGTCTCTGGGCCGTGGCTGCCTCCTATGGCCAGGGTGGTGACCTTTACAGGGAGCT
GTACCCAGTGCTCATGCGGGCCCTGCAGACACTGCCTCCAGAGCTCAGCACTCATCCCCTGCAGCCCCTGTCCATGCAGCGGATGGCCTCTCTGCTCACTCTGCTCACCCAGCTGACCCTGGCAGCTA
GCACACAGCCTGAGGCCACCAGTGGCTCTGTCGAGTCCTGTGTGGTGGCCATCCCTTCCTCAATCACCTGGACACATGTATCTGGACTCAAGCCACTGGTTGAGCCATGTCTAAAGCAGACCCTAAAG
TTTCTGCGCAGACCTGATGTGTGGAATGCCCTGGGTCCGGTGCCTAGTGCCTGCCTTCTGTTCTTGGGTGCTTACTATCAGACCTGGAGCCAGCAGTCAGGCTTGTGCCCAGAGGATTGGCTTCAGGA
CATGGAACGCTTTTTGGATGAATTCTTGCTGCCACTGCTGAGCCAGCCTCCTTTGGGCAGGATGTGGGATTCCTTAAGGGACTGCTCCCCGCTCTGCAATCCGCTGTCCTGTGCTTCCACCCCTGAAG
CTCTCCCCAGCCTCGTGTCACTAGGCTGTGCAGGAGGCTGTCCCCCTCTCAGTGTGGCTGGCTCAGCCTCACCCTTCCCATTCCTCACTGCCCTCCTCTCTCTTATCAACACTCTGGGCCAGATCCAC
AAGGGGCTTTGCAGACAGCTGGCTGTTGTGTTGACTGCCCCAGGACTCCAGAACTACTTTCTCCAGTGTGTGGCTCCTGCACCTGCGCCACAGCTCACACCCTTCTCTGCCTGGGCCCTGCGCCATGA
GTACCACCTACAGTACCTGGTGCTTTCCCTAGCCCAGAAAGCGGCAACATCGCAGCCAGAGCCAGCTGCCAGCACTGCCCTCCATCATGTTATGGCCCTGGTCCTGCTGAGCCGGCTGCTGCCTGGAA
GTGAATTCCTCGCCCACGAGCTGCTGCTGAGCTGTGTGTTCCGGCTGGGGTTCCTGCCGGAAAATGCTTCAGGTGGTCCAGAGGCAGCTGACTTCTCTGATGGGCTGTCCTTAGGGAACAGTGGGGAC
CCTCACTGTAGACGAGGGGCTCTCCTAGTTCAAGCTTGCCAGGATCTCCCCAGCATCCGCAGCTGCTACCTGGCCCATTGTTCACCAGCTCGAGCCAGTCTGCTGACCTCCCAAGCGTTGTACCGTGG
AGAGCTGCCGCGAGTCTCAAGTCTGCTGCTGCCTGTACCTAAGGAGCCACTGCTGCCCACTGACTGGCCCTTCCAGCCGCTGATCCATCTCTACCACCGAGCTTCAGATACTCCCTCTGGGCTGCCTG
CTGCTGACACTGTAGGCATCACCATGCGGGTCCTACAGTGGGTGCTAGTTCTGGAGAGCTGGCGCCCTGAGGCCCTCTGGGCTGTGCCCCCTGCTGCCCGCCTGGCACGTCTCATGTGTGTGTACCTG
GTGGATAGCGAGCTTTTTCGAGAGACTCCCATACAACGTCTAGTGGCTGCTCTTTTAGCTCGGCTCTGTCAGCCCCAAGTCTTGCCAAACCTCAAGCTGGACTGCCCCCTCCCTGGCCTGACCTCCTT
TCCTGACCTCTATGCCAGCTTCTTAGACCACTTTGAGGCCGTCTCATTTGGAGACCACTTGTTTGGGGCTCTGGTCCTCCTTCCTCTGCAGCGCCGGTTCAGTGTCACCTTGCGCCTTGCCCTCTTTG
GGGAGCATGTGGGAGTATTGCGAGCACTTGGCCTGCCTCTGGCTCAGCTGCCTGTGCCTCTGGAGTGCTACACAGAGCCTGCTGAAGACAGCCTGGCTCTCCTTCAGCTCTACTTCCGGGCCCTGGTT
ACTGGTGCACTCCATGCACGTTGGTGCCCCGTCCTCTACACTGTAGCTGTGGCTCATGTCAATAGTTTCGTCTTCTGCCAGGACCCAAAGAGCTCAGATGAGGTGAAGGCTGCCCGAAGGAGTATGCT
GCAGAAGGTGTGGCTACTGGCAGACAAGGATCTGCGGCAGCATCTCCTTCACTATAAACTCCCCAACTCCAGCCTCCCAGAAGGCTTTGAACTGTATCCCCAGTTACCTCGCCTGAGGCAGCAGTACC
TTCAGACGCTGCCCACAGAGGTGCTCCAGAACGGAGGATTCAAGACATAGGGCACTTGCCCCAGCTAAAGATGAACTAAAGATGAGCTAAAGATTCATTCTCCTGAGGCTTCCCGGTGCACATCATGA
GAGAAACACAAGCTTGCCTTCCTTCCTGTGAGCACATCGAGCCTCTTCTTTTAGAACAGAAGGAACTCATATTACATTATGATACTGCAGCTCAGGACCTGGGAGCTCTGAGGGCTGTGCTAGGAGTG
ACTTCAATGTTTCCCCTGCGGTGGCCCAGGACAGTCTGAGCACAGCTCTTCTCACCACCTCCCATCTTTACCAGGTCAGGGTGTGTGATTGCTGTGCTACGCCCTGAAATAAAATTCTTTTCTAGTCT
TACTGA

hide sequence

RefSeq Acc Id:

XM_006234773 ⟹ XP_006234835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,200,450 - 127,221,905 (-)	NCBI
mRatBN7.2	3	106,746,982 - 106,768,159 (-)	NCBI
Rnor_6.0	3	111,565,646 - 111,587,182 (-)	NCBI
Rnor_5.0	3	118,114,106 - 118,135,644 (-)	NCBI

Sequence:

show sequence

CGGCGGCGGAAGTGCCGCTCCGCACGGCTAAGATGGCGGCGCCCAGGCCGGTCTTGTTCGAGTA
GGTTGCTGTTTGCAGGGACCCGCTTCAAGTTACTCAGGAGTGAATGAGAGGAATTCTCTTCACCAACAACGCAGTACTGGAAGGAGTCATCCACAGTTCACAGCTCCAGGGTCATGATGTTGTCCAGA
CCGAAGCCTGGAGAGTCTGAGGTGGACCTACTGCGCTTCCAAAGTCAGTTCCTCGAGGCTGGTGCAGCTCCAGCGGTGCAGCTGGTGAAAGGGAGTAGGAGGCGTGGTGATGCGCATCCAGACCAGCT
CCCCCCACAGGACCATCGGGATGTGGTGATGCTGGACAGTCTCCCAGATTTGCCCCCGGCTCTGCTTCCTGCTCCTTCCAAGAGAGCTAGACCAAGCCCTGGCCGCCCCCTGCCTCACGATGAAGACC
CTGAGGAGAGGCTGAACAGACACGATGAGCACATCACTGCTGTTTTGTCTAAGATTGTTGAACGGGATACAAGTTCAGTTACTGTGACTCTGCCTGTGCCCAGTGGTGTGGCTTTCCCCCCTGTGTTC
CACCGCTCTCAGGAGAGACAGGTGAAACCAGCAGCATCTAGTAAAAGGAGCATCTTTGCCCAAGAGATTGCAGCAAGGAGGGTGTCAGACAACAGGGCACCATCAGCTGAGCAAGTTGTCCCCAGCCC
AGATGCACCAGAGGGTGCCGTGCCCTGTGAGACACCCTCCTCTAAGGACAGAGGCAGCCAGCTTCCTGGGAGGAGCCATAGCTTCCACAGACCAAATCTAATCACAGGAAAGGGGCTCAGGAGCCAGG
CGGCTGTGCAGGAGGTCCAGACCATCCATGAAGAGAATGTAGCAAGACTACAAGCCATGGATCCTGAGGAGATCCTGAAGGAGCAGCAGCAGTTACTGGCTCAACTTGACCCCAGCTTGGTTGCCTTC
TTGAGAGCTCATAACCATACCCGGGAGCAAACAGAAACAAAAGCCACCAAGGAGCAGAACCCAGAAAGGCCCTCAGTTCCTGTCAGTAAAGAAGAGCCCATCATGTCAACATGTACCGGGGAGTCTGG
GACCAGGGACAAGCTGGAGGACAAGTTGGAGGACAAGCTGCAGCCAAGAACCCCAGCACTGAAGCTCCCCATGACCCCCAACAAAGAATGGCTCCATATGGACACCGTAGAGCTGGAGAAGCTCCACT
GGACCCAGGACCTGCCACCGCTCCGGCGGCAGCAGACACAGGAGAGAATGCAGGCTCGATTCAGCCTTCAGGGAGAGCTCCTGGAGCCTGATGTGGATCTGCCCACACATCTGGGCCTGCACCACCAC
GGAGAAGAGGCAGAGAGAGCAGGGTACTCTCTACAGGAGCTGTTCCACCTGACCCGTAGCCAGGTATCCCAGCAGAGAGCACTGGCATTGCATGTGTTGTCCCACATCGTCGGCAGGGCCCAGGCTGG
TGAGTTTGGGGACCGTCTAGTGGGCAGTGTCTTGCGCCTCCTCTTGGATGCTGGCTTCCTCTTCCTGCTGCGCTTCTCTCTGGATGACAGGATAGACAGCGTCATTGCAGCAGCTGTCCGAGCTCTTC
GTGCTCTGCTGGTTGCTCCTGGAGATGAGGAGCTCCTTGACAGCACCTTCTCTTGGTATCATGGAGCTTCAGTGTTCCCTATGATGCCCAGCCACGACGATAAAGAGGATGAAGATGAGGACGAAGAA
CTCACAAAAGAAAAGGTGAATCGAAAGACCCCTGAGGAAGGAAGCCGCCCTCCACCCGACCTGGCCAGACATGATGTCATCAAGGGTCTTCTGGCTACCAACCTGCTGCCTCGGTTCCGCTATGTGCT
GGAGGTGACCTGCCCAGGGCCCTCTGTGGTCCTTGACATCCTGGCTGTGCTTATACGCCTGGCCCGGCATTCCCTGGAGTCAGCCATGAGGGTCCTGGAGTGTCCTCGGCTGATGGAGACCATAGTTC
GGGAGTTCTTGCCGACCAGTTGGTCCCCTATAGGGGTGGGGCCTGCTCCCAGTCTATATAAAGTGCCTTGTGCTGCTGCCATGAAACTACTCAGGGTCCTGGCCTCAGCTGGGAGGAATATCGCTGCC
CGACTGCTAAGCAGCTTTGATGTCAGGAGCCGACTGTGCCGATTCATAGCTGAAGCACCACGTGACCTGGCCTTGCCATTCGAAGAAGCAGAGATCCTGACAACTGAGGCCTTCCGTCTCTGGGCCGT
GGCTGCCTCCTATGGCCAGGGTGGTGACCTTTACAGGGAGCTGTACCCAGTGCTCATGCGGGCCCTGCAGACACTGCCTCCAGAGCTCAGCACTCATCCCCTGCAGCCCCTGTCCATGCAGCGGATGG
CCTCTCTGCTCACTCTGCTCACCCAGCTGACCCTGGCAGCTAGCACACAGCCTGAGGCCACCAGTGGCTCTGTCGAGTCCTGTGTGGTGGCCATCCCTTCCTCAATCACCTGGACACATGTATCTGGA
CTCAAGCCACTGGTTGAGCCATGTCTAAAGCAGACCCTAAAGTTTCTGCGCAGACCTGATGTGTGGAATGCCCTGGGTCCGGTGCCTAGTGCCTGCCTTCTGTTCTTGGGTGCTTACTATCAGACCTG
GAGCCAGCAGTCAGGCTTGTGCCCAGAGGATTGGCTTCAGGACATGGAACGCTTTTTGGATGAATTCTTGCTGCCACTGCTGAGCCAGCCTCCTTTGGGCAGGATGTGGGATTCCTTAAGGGACTGCT
CCCCGCTCTGCAATCCGCTGTCCTGTGCTTCCACCCCTGAAGCTCTCCCCAGCCTCGTGTCACTAGGCTGTGCAGGAGGCTGTCCCCCTCTCAGTGTGGCTGGCTCAGCCTCACCCTTCCCATTCCTC
ACTGCCCTCCTCTCTCTTATCAACACTCTGGGCCAGATCCACAAGGGGCTTTGCAGACAGCTGGCTGTTGTGTTGACTGCCCCAGGACTCCAGAACTACTTTCTCCAGTGTGTGGCTCCTGCACCTGC
GCCACAGCTCACACCCTTCTCTGCCTGGGCCCTGCGCCATGAGTACCACCTACAGTACCTGGTGCTTTCCCTAGCCCAGAAAGCGGCAACATCGCAGCCAGAGCCAGCTGCCAGCACTGCCCTCCATC
ATGTTATGGCCCTGGTCCTGCTGAGCCGGCTGCTGCCTGGAAGTGAATTCCTCGCCCACGAGCTGCTGCTGAGCTGTGTGTTCCGGCTGGGGTTCCTGCCGGAAAATGCTTCAGGTGGTCCAGAGGCA
GCTGACTTCTCTGATGGGCTGTCCTTAGGGAACAGTGGGGACCCTCACTGTAGACGAGGGGCTCTCCTAGTTCAAGCTTGCCAGGATCTCCCCAGCATCCGCAGCTGCTACCTGGCCCATTGTTCACC
AGCTCGAGCCAGTCTGCTGACCTCCCAAGCGTTGTACCGTGGAGAGCTGCCGCGAGTCTCAAGTCTGCTGCTGCCTGTACCTAAGGAGCCACTGCTGCCCACTGACTGGCCCTTCCAGCCGCTGATCC
ATCTCTACCACCGAGCTTCAGATACTCCCTCTGGGCTGCCTGCTGCTGACACTGTAGGCATCACCATGCGGGTCCTACAGTGGGTGCTAGTTCTGGAGAGCTGGCGCCCTGAGGCCCTCTGGGCTGTG
CCCCCTGCTGCCCGCCTGGCACGTCTCATGTGTGTGTACCTGGTGGATAGCGAGCTTTTTCGAGAGACTCCCATACAACGTCTAGTGGCTGCTCTTTTAGCTCGGCTCTGTCAGCCCCAAGTCTTGCC
AAACCTCAAGCTGGACTGCCCCCTCCCTGGCCTGACCTCCTTTCCTGACCTCTATGCCAGCTTCTTAGACCACTTTGAGGCCGTCTCATTTGGAGACCACTTGTTTGGGGCTCTGGTCCTCCTTCCTC
TGCAGCGCCGGTTCAGTGTCACCTTGCGCCTTGCCCTCTTTGGGGAGCATGTGGGAGTATTGCGAGCACTTGGCCTGCCTCTGGCTCAGCTGCCTGTGCCTCTGGAGTGCTACACAGAGCCTGCTGAA
GACAGCCTGGCTCTCCTTCAGCTCTACTTCCGGGCCCTGGTTACTGGTGCACTCCATGCACGTTGGTGCCCCGTCCTCTACACTGTAGCTGTGGCTCATGTCAATAGTTTCGTCTTCTGCCAGGACCC
AAAGAGCTCAGATGAGGTGAAGGCTGCCCGAAGGAGTATGCTGCAGAAGGTGTGGCTACTGGCAGACAAGGATCTGCGGCAGCATCTCCTTCACTATAAACTCCCCAACTCCAGCCTCCCAGAAGGCT
TTGAACTGTATCCCCAGTTACCTCGCCTGAGGCAGCAGTACCTTCAGACGCTGCCCACAGAGGTGCTCCAGAACGGAGGATTCAAGACATAGGGCACTTGCCCCAGCTAAAGATGAACTAAAGATGAG
CTAAAGATTCATTCTCCTGAGGCTTCCCGGTGCACATCATGAGAGAAACACAAGCTTGCCTTCCTTCCTGTGAGCACATCGAGCCTCTTCTTTTAGAACAGAAGGAACTCATATTACATTATGATACT
GCAGCTCAGGACCTGGGAGCTCTGAGGGCTGTGCTAGGAGTGACTTCAATGTTTCCCCTGCGGTGGCCCAGGACAGTCTGAGCACAGCTCTTCTCACCACCTCCCATCTTTACCAGGTCAGGGTGTGT
GATTGCTGTGCTACGCCCTGAAATAAAATTCTTTTCTAGTCTTACTGA

hide sequence

RefSeq Acc Id:

XM_039104940 ⟹ XP_038960868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	127,200,450 - 127,212,107 (-)	NCBI
mRatBN7.2	3	106,746,642 - 106,758,303 (-)	NCBI


Protein RefSeqs	NP_001029171	(Get FASTA)	NCBI Sequence Viewer
	NP_001420309	(Get FASTA)	NCBI Sequence Viewer
	XP_006234833	(Get FASTA)	NCBI Sequence Viewer
	XP_006234834	(Get FASTA)	NCBI Sequence Viewer
	XP_006234835	(Get FASTA)	NCBI Sequence Viewer
	XP_038960868	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79927	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007299
	ENSRNOP00000007299.3
GenBank Protein	Q3T1I9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001029171 ⟸ NM_001033999

- UniProtKB:

Q3T1I9 (UniProtKB/Swiss-Prot), A0A8I6GL25 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVTLPVPSGVA
FPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDP
SLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPTHL
GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPMMPSHDDKEDE
DEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAG
RNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITW
THVSGLKPLVEPCLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSAS
PFPFLTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENAS
GGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPE
ALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECY
TEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTLPTEVLQNGGFKT

hide sequence

RefSeq Acc Id:	XP_006234834 ⟸ XM_006234772
- Peptide Label:	isoform X1
- UniProtKB:	Q3T1I9 (UniProtKB/Swiss-Prot), A0A8I6GL25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVTLPVPSGVA FPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDP SLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPTHL GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPMMPSHDDKEDE DEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAG RNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITW THVSGLKPLVEPCLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSAS PFPFLTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENAS GGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPE ALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECY TEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTLPTEVLQNGGFKT hide sequence

RefSeq Acc Id:

XP_006234833 ⟸ XM_006234771

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVTLPVPSGVA
FPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDP
SLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPTHL
GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPMMPSHDDKEDE
DEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAG
RNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITW
THVSGLKPLVEPCLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSAS
PFPFLTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENAS
GGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPE
ALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECY
TEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTLPTEVLQNGGFKT

hide sequence

RefSeq Acc Id:	XP_006234835 ⟸ XM_006234773
- Peptide Label:	isoform X1
- UniProtKB:	Q3T1I9 (UniProtKB/Swiss-Prot), A0A8I6GL25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVTLPVPSGVA FPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDP SLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPTHL GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPMMPSHDDKEDE DEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAG RNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITW THVSGLKPLVEPCLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSAS PFPFLTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENAS GGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPE ALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECY TEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTLPTEVLQNGGFKT hide sequence

Ensembl Acc Id:

ENSRNOP00000007299 ⟸ ENSRNOT00000007299

Protein Domains

RNA polymerase II-associated protein 1 C-terminal RNA polymerase II-associated protein 1 N-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3T1I9-F1-model_v2	AlphaFold	Q3T1I9	1-1400	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13692336

Promoter ID:

EPDNEW_R2859

Type:

multiple initiation site

Name:

Rpap1_1

Description:

RNA polymerase II associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	111,587,161 - 111,587,221	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-48190	BioCyc
Ensembl Genes	ENSRNOG00000005483	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007299	ENTREZGENE
	ENSRNOT00000007299.7	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7930932	IMAGE-MGC_LOAD
InterPro	ARM-type_fold	UniProtKB/Swiss-Prot
	RNA_pol_II_AP1_C	UniProtKB/Swiss-Prot
	RNA_pol_II_AP1_N	UniProtKB/Swiss-Prot
	RPAP1/Rba50	UniProtKB/Swiss-Prot
KEGG Report	rno:311338	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124682	IMAGE-MGC_LOAD
NCBI Gene	311338	ENTREZGENE
PANTHER	PTHR21483	UniProtKB/Swiss-Prot
	RNA POLYMERASE II-ASSOCIATED PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	RPAP1_C	UniProtKB/Swiss-Prot
	RPAP1_N	UniProtKB/Swiss-Prot
PhenoGen	Rpap1	PhenoGen
RatGTEx	ENSRNOG00000005483	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A8I6GL25	ENTREZGENE, UniProtKB/TrEMBL
	A6HPH6_RAT	UniProtKB/TrEMBL
	Q3T1I9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-11-20	Rpap1	RNA polymerase II associated protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar