Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Rpap1 (RNA polymerase II associated protein 1) Rattus norvegicus
Analyze
Symbol: Rpap1
Name: RNA polymerase II associated protein 1
Description: Predicted to have DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to human RPAP1 (RNA polymerase II associated protein 1); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: RNA polymerase II-associated protein 1
Orthologs:
Homo sapiens (human) : RPAP1 (RNA polymerase II associated protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Rpap1 (RNA polymerase II associated protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rpap1 (RNA polymerase II associated protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : RPAP1 (RNA polymerase II associated protein 1)
Canis lupus familiaris (dog) : RPAP1 (RNA polymerase II associated protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rpap1 (RNA polymerase II associated protein 1)
Sus scrofa (pig) : RPAP1 (RNA polymerase II associated protein 1)
Chlorocebus sabaeus (green monkey) : RPAP1 (RNA polymerase II associated protein 1)
Heterocephalus glaber (naked mole-rat) : Rpap1 (RNA polymerase II associated protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03111,565,646 - 111,587,184 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,565,650 - 111,587,151 (-)Ensembl
Rnor_5.03118,114,106 - 118,135,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,278,216 - 106,299,720 (-)NCBIRGSC3.4rn4RGSC3.4
Celera3105,657,541 - 105,679,027 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rpap1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1590891
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.