Igsf9b (immunoglobulin superfamily, member 9B) - Rat Genome Database

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Gene: Igsf9b (immunoglobulin superfamily, member 9B) Rattus norvegicus
Analyze
Symbol: Igsf9b
Name: immunoglobulin superfamily, member 9B
RGD ID: 1564717
Description: Predicted to enable kinase binding activity. Predicted to be involved in synaptic membrane adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and positive regulation of inhibitory postsynaptic potential. Is active in GABA-ergic synapse and postsynaptic specialization of symmetric synapse. Orthologous to human IGSF9B (immunoglobulin superfamily member 9B); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC315510; RGD1564717; similar to immunoglobulin superfamily, member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8833,971,779 - 34,027,390 (+)NCBIGRCr8
mRatBN7.2825,712,644 - 25,769,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl825,712,644 - 25,758,554 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx829,754,600 - 29,800,497 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0828,048,896 - 28,094,798 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0825,928,882 - 25,974,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0828,352,497 - 28,398,659 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl828,352,772 - 28,387,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0828,371,484 - 28,417,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4826,905,723 - 26,941,081 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera827,199,908 - 27,245,801 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. The adhesion protein IgSF9b is coupled to neuroligin 2 via S-SCAM to promote inhibitory synapse development. Woo J, etal., J Cell Biol. 2013 Jun 10;201(6):929-44. doi: 10.1083/jcb.201209132.

Genomics

Comparative Map Data
Igsf9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8833,971,779 - 34,027,390 (+)NCBIGRCr8
mRatBN7.2825,712,644 - 25,769,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl825,712,644 - 25,758,554 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx829,754,600 - 29,800,497 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0828,048,896 - 28,094,798 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0825,928,882 - 25,974,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0828,352,497 - 28,398,659 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl828,352,772 - 28,387,383 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0828,371,484 - 28,417,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4826,905,723 - 26,941,081 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera827,199,908 - 27,245,801 (+)NCBICelera
Cytogenetic Map8q13NCBI
IGSF9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811133,896,438 - 133,956,968 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11133,896,438 - 133,956,968 (-)EnsemblGRCh38hg38GRCh38
GRCh3711133,766,333 - 133,826,863 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611133,290,395 - 133,332,090 (-)NCBINCBI36Build 36hg18NCBI36
Celera11130,958,989 - 131,000,543 (-)NCBICelera
Cytogenetic Map11q25NCBI
HuRef11129,733,097 - 129,781,186 (-)NCBIHuRef
CHM1_111133,666,445 - 133,714,597 (-)NCBICHM1_1
T2T-CHM13v2.011133,938,732 - 133,999,751 (-)NCBIT2T-CHM13v2.0
Igsf9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39927,210,400 - 27,268,845 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl927,210,500 - 27,268,842 (+)EnsemblGRCm39 Ensembl
GRCm38927,299,104 - 27,357,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl927,299,204 - 27,357,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37927,106,813 - 27,142,348 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36927,048,674 - 27,079,581 (+)NCBIMGSCv36mm8
Celera924,556,035 - 24,591,567 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map912.69NCBI
Igsf9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541234,724,220 - 34,767,970 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541234,712,556 - 34,828,013 (-)NCBIChiLan1.0ChiLan1.0
IGSF9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29134,604,031 - 134,673,944 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111135,710,087 - 135,778,760 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011128,734,144 - 128,802,383 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111132,615,398 - 132,664,817 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11132,615,398 - 132,664,811 (-)Ensemblpanpan1.1panPan2
IGSF9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.151,273,897 - 1,330,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl51,273,444 - 1,320,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha51,393,068 - 1,449,478 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.051,229,631 - 1,282,799 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl51,229,490 - 1,275,977 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.151,262,743 - 1,319,089 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.051,263,137 - 1,309,321 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.051,300,951 - 1,357,368 (+)NCBIUU_Cfam_GSD_1.0
Igsf9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947115,640,774 - 115,700,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366841,902,077 - 1,992,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366841,902,111 - 1,956,106 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGSF9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl960,478,029 - 60,521,465 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1960,467,321 - 60,521,463 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2967,034,855 - 67,060,060 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IGSF9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11124,969,228 - 125,021,334 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1124,974,027 - 125,021,200 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660431,024,070 - 1,075,009 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igsf9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248128,470,958 - 8,514,368 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248128,436,525 - 8,514,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Igsf9b
127 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:85
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000012391
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat

Markers in Region
BE119595  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2825,713,336 - 25,713,490 (+)MAPPERmRatBN7.2
Rnor_6.0828,353,191 - 28,353,344NCBIRnor6.0
Rnor_5.0828,372,180 - 28,372,333UniSTSRnor5.0
RGSC_v3.4826,906,368 - 26,906,521UniSTSRGSC3.4
Celera827,200,602 - 27,200,755UniSTS
RH 3.4 Map8221.6UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 62
Low 2 40 22 6 15 6 2 2 12 35 41 8 2
Below cutoff 1 2 9 9 4 9 6 6 3 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001376950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001054496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_235959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012391   ⟹   ENSRNOP00000012391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,712,644 - 25,758,554 (+)Ensembl
Rnor_6.0 Ensembl828,352,772 - 28,387,383 (+)Ensembl
RefSeq Acc Id: NM_001376950   ⟹   NP_001363879
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,779 - 34,017,680 (+)NCBI
mRatBN7.2825,712,644 - 25,758,554 (+)NCBI
RefSeq Acc Id: XM_006242743   ⟹   XP_006242805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,802 - 34,027,390 (+)NCBI
mRatBN7.2825,712,663 - 25,769,481 (+)NCBI
Rnor_6.0828,352,498 - 28,398,659 (+)NCBI
Rnor_5.0828,371,484 - 28,417,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595986   ⟹   XP_017451475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,801 - 34,007,378 (+)NCBI
mRatBN7.2825,712,662 - 25,748,256 (+)NCBI
Rnor_6.0828,352,497 - 28,388,368 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595988   ⟹   XP_017451477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,802 - 34,017,165 (+)NCBI
mRatBN7.2825,712,663 - 25,758,035 (+)NCBI
Rnor_6.0828,352,497 - 28,398,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595989   ⟹   XP_017451478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,802 - 34,017,165 (+)NCBI
mRatBN7.2825,712,663 - 25,758,035 (+)NCBI
Rnor_6.0828,352,497 - 28,398,086 (+)NCBI
Sequence:
RefSeq Acc Id: XM_235959   ⟹   XP_235959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,803 - 34,027,390 (+)NCBI
mRatBN7.2825,712,664 - 25,769,481 (+)NCBI
Rnor_6.0828,352,498 - 28,398,659 (+)NCBI
Rnor_5.0828,371,484 - 28,417,964 (+)NCBI
RGSC_v3.4826,905,723 - 26,941,081 (+)RGD
Sequence:
RefSeq Acc Id: XR_005487809
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,802 - 34,017,043 (+)NCBI
mRatBN7.2825,712,663 - 25,757,921 (+)NCBI
RefSeq Acc Id: XR_005487810
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8833,971,802 - 34,017,043 (+)NCBI
mRatBN7.2825,712,663 - 25,757,921 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_235959   ⟸   XM_235959
- Peptide Label: isoform X1
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006242805   ⟸   XM_006242743
- Peptide Label: isoform X4
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451477   ⟸   XM_017595988
- Peptide Label: isoform X3
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451478   ⟸   XM_017595989
- Peptide Label: isoform X5
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451475   ⟸   XM_017595986
- Peptide Label: isoform X2
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012391   ⟸   ENSRNOT00000012391
RefSeq Acc Id: NP_001363879   ⟸   NM_001376950
- Peptide Label: precursor
- UniProtKB: D3ZB51 (UniProtKB/Swiss-Prot),   A0A8L2Q5X0 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZB51-F1-model_v2 AlphaFold D3ZB51 1-1328 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564717 AgrOrtholog
BioCyc Gene G2FUF-31302 BioCyc
Ensembl Genes ENSRNOG00000009253 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012391 ENTREZGENE
  ENSRNOT00000012391.7 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 315510 ENTREZGENE
PANTHER PROTEIN SIDEKICK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN TURTLE HOMOLOG B ISOFORM X1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Igsf9b PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009253 RatGTEx
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2Q5X0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB51 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Igsf9b  immunoglobulin superfamily, member 9B   Igsf9b_predicted  immunoglobulin superfamily, member 9B (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Igsf9b_predicted  immunoglobulin superfamily, member 9B (predicted)  RGD1564717_predicted  similar to immunoglobulin superfamily, member 9 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1564717_predicted  similar to immunoglobulin superfamily, member 9 (predicted)  LOC315510  similar to immunoglobulin superfamily, member 9  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC315510  similar to immunoglobulin superfamily, member 9      Symbol and Name status set to provisional 70820 PROVISIONAL