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Gene: Kxd1 (KxDL motif containing 1) Rattus norvegicus

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Symbol:

Kxd1 (Ensembl: Uba52)

Name:

KxDL motif containing 1 (Ensembl:ubiquitin A-52 residue ribosomal protein fusion product 1)

RGD ID:

1562866

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in lysosome localization and vesicle-mediated transport. Predicted to be located in several cellular components, including cytosol; lysosomal membrane; and ribosome. Predicted to be part of BLOC-1 complex and BORC complex. Orthologous to human KXD1 (KxDL motif containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC498606; kxDL motif-containing protein 1; LOC498606; UPF0459 protein C19orf50 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KXD1 (KxDL motif containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	KXD1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kxd1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kxd1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10681	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	kxd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kxd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,929,316 - 18,950,239 (+)	NCBI		GRCr8
mRatBN7.2	16	18,895,343 - 18,916,266 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,900,616 - 18,920,807 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,948,538 - 18,958,041 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,081,243 - 20,090,744 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,001,500 - 19,011,003 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,652,863 - 20,666,581 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,657,099 - 20,666,579 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,413,529 - 19,423,011 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	19,098,221 - 19,107,703 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1		ISO	KXD1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	Hermansky-Pudlak syndrome		ISS	Kxd1 (Mus musculus)	13592920		MouseDO

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	Kxd1 (Mus musculus)	6480464	2 more ...	CTD	PMID:31388691
Kxd1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of KXD1 mRNA	CTD	PMID:33387578
Kxd1	Rat	acrolein	multiple interactions	ISO	KXD1 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of KXD1 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of KXD1 mRNA	CTD	PMID:32699268
Kxd1	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of KXD1 mRNA	CTD	PMID:33354967
Kxd1	Rat	alpha-pinene	multiple interactions	ISO	KXD1 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of KXD1 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of KXD1 mRNA	CTD	PMID:32699268
Kxd1	Rat	benzo[a]pyrene	affects methylation	ISO	KXD1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of KXD1 promoter	CTD	PMID:27901495
Kxd1	Rat	benzo[a]pyrene	decreases methylation	ISO	KXD1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of KXD1 3' UTR	CTD	PMID:27901495
Kxd1	Rat	beta-lapachone	decreases expression	ISO	KXD1 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of KXD1 mRNA	CTD	PMID:38218311
Kxd1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of KXD1 mRNA	CTD	PMID:25181051
Kxd1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of KXD1 mRNA	CTD	PMID:30816183 and PMID:32528016
Kxd1	Rat	chlorpyrifos	increases expression	ISO	Kxd1 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of KXD1 mRNA	CTD	PMID:37019170
Kxd1	Rat	cyclosporin A	increases expression	ISO	KXD1 (Homo sapiens)	6480464	Cyclosporine results in increased expression of KXD1 mRNA	CTD	PMID:25562108
Kxd1	Rat	dicrotophos	increases expression	ISO	KXD1 (Homo sapiens)	6480464	dicrotophos results in increased expression of KXD1 mRNA	CTD	PMID:28302478
Kxd1	Rat	doxorubicin	increases expression	ISO	KXD1 (Homo sapiens)	6480464	Doxorubicin results in increased expression of KXD1 mRNA	CTD	PMID:29803840
Kxd1	Rat	fenthion	increases expression	ISO	Kxd1 (Mus musculus)	6480464	Fenthion results in increased expression of KXD1 mRNA	CTD	PMID:34813904
Kxd1	Rat	finasteride	increases expression	EXP		6480464	Finasteride results in increased expression of KXD1 mRNA	CTD	PMID:24136188
Kxd1	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of KXD1 mRNA	CTD	PMID:24136188
Kxd1	Rat	nefazodone	increases expression	EXP		6480464	nefazodone results in increased expression of KXD1 mRNA	CTD	PMID:24136188
Kxd1	Rat	nimesulide	increases expression	EXP		6480464	nimesulide results in increased expression of KXD1 mRNA	CTD	PMID:24136188
Kxd1	Rat	ozone	multiple interactions	ISO	KXD1 (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of KXD1 mRNA more ...	CTD	PMID:32699268 and PMID:35430440
Kxd1	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of KXD1 mRNA	CTD	PMID:33387578
Kxd1	Rat	temozolomide	increases expression	ISO	KXD1 (Homo sapiens)	6480464	Temozolomide results in increased expression of KXD1 mRNA	CTD	PMID:31758290
Kxd1	Rat	tetrachloromethane	decreases expression	ISO	Kxd1 (Mus musculus)	6480464	Carbon Tetrachloride results in decreased expression of KXD1 mRNA	CTD	PMID:31919559
Kxd1	Rat	triphenyl phosphate	affects expression	ISO	KXD1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of KXD1 mRNA	CTD	PMID:37042841
Kxd1	Rat	triptonide	increases expression	ISO	Kxd1 (Mus musculus)	6480464	triptonide results in increased expression of KXD1 mRNA	CTD	PMID:33045310
Kxd1	Rat	valdecoxib	increases expression	EXP		6480464	valdecoxib results in increased expression of KXD1 mRNA	CTD	PMID:24136188
Kxd1	Rat	valproic acid	increases methylation	ISO	KXD1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of KXD1 gene	CTD	PMID:29154799
Kxd1	Rat	valproic acid	decreases expression	ISO	KXD1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of KXD1 mRNA	CTD	PMID:23179753

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	lysosome localization	involved_in	ISS	UniProtKB:Q9BQD3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Kxd1	Rat	lysosome localization	involved_in	IEA	UniProtKB:Q9BQD3 and ensembl:ENSP00000222307	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Kxd1	Rat	lysosome localization	involved_in	IBA	PANTHER:PTN000337884 and UniProtKB:Q9BQD3	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Kxd1	Rat	lysosome localization	involved_in	ISO	KXD1 (Homo sapiens)	1624291	PMID:25898167	RGD	PMID:25898167
Kxd1	Rat	translation	involved_in	IEA	InterPro:IPR001975 and InterPro:IPR011332	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Kxd1	Rat	vesicle-mediated transport	involved_in	ISS	UniProtKB:Q80XH1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Kxd1	Rat	vesicle-mediated transport	involved_in	ISO	Kxd1 (Mus musculus)	1624291	PMID:22554196	RGD	PMID:22554196

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	BLOC-1 complex	located_in	ISS	UniProtKB:Q80XH1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Kxd1	Rat	BLOC-1 complex	part_of	ISO	Kxd1 (Mus musculus)	1624291	PMID:22554196	RGD	PMID:22554196
Kxd1	Rat	BORC complex	part_of	ISS	UniProtKB:Q9BQD3	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Kxd1	Rat	BORC complex	part_of	IEA	UniProtKB:Q9BQD3 and ensembl:ENSP00000222307	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Kxd1	Rat	BORC complex	part_of	IBA	PANTHER:PTN000337884 and UniProtKB:Q9BQD3	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Kxd1	Rat	BORC complex	part_of	ISO	KXD1 (Homo sapiens)	1624291	PMID:25898167	RGD	PMID:25898167
Kxd1	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Kxd1	Rat	cytosol	located_in	IEA	ARBA:ARBA00029243	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Kxd1	Rat	lysosomal membrane	located_in	IEA	UniProtKB-SubCell:SL-0157	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Kxd1	Rat	lysosome	located_in	IEA	UniProtKB-KW:KW-0458	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Kxd1	Rat	ribonucleoprotein complex	part_of	IEA	UniProtKB-KW:KW-0687	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	ribosome	located_in	IEA	UniProtKB-KW:KW-0689	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Kxd1	Rat	ribosome	located_in	IEA	InterPro:IPR001975	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Kxd1	Rat	protein binding	enables	ISO	KXD1 (Homo sapiens)	1624291	UniProtKB:O00471 more ...	RGD	PMID:16189514 more ...
Kxd1	Rat	protein binding	enables	ISO	Kxd1 (Mus musculus)	1624291	UniProtKB:O55102 more ...	RGD	PMID:22554196
Kxd1	Rat	structural constituent of ribosome	enables	IEA	InterPro:IPR001975	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:22554196	PMID:25898167

Kxd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,929,316 - 18,950,239 (+)	NCBI		GRCr8
mRatBN7.2	16	18,895,343 - 18,916,266 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,900,616 - 18,920,807 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,948,538 - 18,958,041 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,081,243 - 20,090,744 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,001,500 - 19,011,003 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,652,863 - 20,666,581 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,657,099 - 20,666,579 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,413,529 - 19,423,011 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	19,098,221 - 19,107,703 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

KXD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	18,557,870 - 18,569,378 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	18,557,762 - 18,569,387 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	18,668,680 - 18,680,188 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	18,529,604 - 18,541,188 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	18,570,781 - 18,582,406 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,231,216 - 18,242,793 (+)	NCBI		HuRef
CHM1_1	19	18,668,755 - 18,680,395 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	18,692,823 - 18,704,439 (+)	NCBI		T2T-CHM13v2.0

Kxd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,966,046 - 70,975,830 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,960,922 - 70,980,606 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,513,396 - 70,523,180 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,508,272 - 70,527,956 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,037,295 - 73,047,079 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,442,375 - 73,452,456 (-)	NCBI		MGSCv36	mm8
Celera	8	73,069,814 - 73,079,598 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Kxd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	3,006,147 - 3,018,772 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	3,010,997 - 3,018,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

KXD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,416,612 - 23,428,315 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,425,093 - 22,436,806 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,034,887 - 18,046,603 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,005,136 - 19,016,552 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

KXD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,480,634 - 44,489,287 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,481,557 - 44,489,188 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	44,395,324 - 44,403,971 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,966,831 - 44,975,480 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,966,833 - 44,975,457 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	44,204,193 - 44,212,842 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,614,149 - 44,622,792 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,889,594 - 44,898,242 (-)	NCBI		UU_Cfam_GSD_1.0

Kxd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,162,194 - 203,170,726 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,706,994 - 2,719,846 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,711,326 - 2,719,839 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KXD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,242,310 - 59,247,713 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	59,242,301 - 59,250,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,051,909 - 59,060,504 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KXD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,028,785 - 17,037,871 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,028,819 - 17,037,867 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	2,300,533 - 2,309,641 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kxd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	1,736,899 - 1,750,516 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	1,737,166 - 1,744,918 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Kxd1
47 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	77
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000027053
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15726433	21034895	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

RH128121

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,915,948 - 18,916,160 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,666,269 - 20,666,480	NCBI	Rnor6.0
Rnor_5.0	16	20,521,748 - 20,521,959	UniSTS	Rnor5.0
RGSC_v3.4	16	19,422,699 - 19,422,910	UniSTS	RGSC3.4
Celera	16	19,107,391 - 19,107,602	UniSTS
Cytogenetic Map	16	p14	UniSTS

RH126344

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,916,055 - 18,916,251 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	20,666,376 - 20,666,571	NCBI	Rnor6.0
Rnor_5.0	16	20,521,855 - 20,522,050	UniSTS	Rnor5.0
RGSC_v3.4	16	19,422,806 - 19,423,001	UniSTS	RGSC3.4
Celera	16	19,107,498 - 19,107,693	UniSTS
Cytogenetic Map	16	p14	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001025143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC088216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027053 ⟹ ENSRNOP00000027053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,906,745 - 18,916,261 (+)	Ensembl
Rnor_6.0 Ensembl	16	20,657,099 - 20,666,579 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000027073 ⟹ ENSRNOP00000027073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,918,661 - 18,920,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097213 ⟹ ENSRNOP00000093549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,900,616 - 18,916,261 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097271 ⟹ ENSRNOP00000083379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,906,863 - 18,914,928 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108401 ⟹ ENSRNOP00000079541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	18,906,863 - 18,920,807 (+)	Ensembl

RefSeq Acc Id:

NM_001025143 ⟹ NP_001020314

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,940,752 - 18,950,234 (+)	NCBI
mRatBN7.2	16	18,906,779 - 18,916,261 (+)	NCBI
Rnor_6.0	16	20,657,099 - 20,666,581 (+)	NCBI
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI
RGSC_v3.4	16	19,413,529 - 19,423,011 (+)	RGD
Celera	16	19,098,221 - 19,107,703 (+)	RGD

Sequence:

show sequence

GGCGCTTGGACAGAAGGAACACATGGACGCTCCGTGATGACGTACGCGCGCTGGCGCCATCCCGGAAGCGCCATCCTGGCCGCCAGATGTGCAGGCTTCAGGGGTTAAGGAGAAAGAGATGGACACCC
CAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTGATGACGTCAACGCCATAATTCTGGCCCAGAAGAACATGCTGGACCGCTTCGAGAAAACCAACGAGATGCTTCTG
AACTTCAACAATCTGTCCAGCGTGCGGCTGCAGCAGATGAGCGAGCGCTTCATGCACCACACCCGCACCTTGGTGGACATGAAACGGGACCTGGACAGCATCTTCCGCAGGATCAGGACACTGAAGGG
GAAGCTGGCCCGGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCACTCCTAGAGGACGAAGATGAAGACCCTGTTCCACCCAGTATCACCACAACCATCGCCACCTCAGAGCAGAGCACAG
GGTCCTGTGACACCAGCCCTGACACTGCCTCTCCATCCTTCAGTCCTGGCTTTGAGGACCTATCACACATTCGACCTGGCTCTCCTGCCATCAATGGCCACAGCCAAACAGATGATGAGGAAGAAACA
CGTGAAGAATAACCTCTCTCCCAACCTCCCAGAAAGGCCCAGGGCAGCAGTGGTTCTCCTAGGGTCACAGTCAGTCAGCTTTGCTGCTCCTTTCTTTTGTAGGCAGGGTTCCTAATTCCTGCCACTCC
CCGTAAGAGCAGGACTTCCTATGCCAGCATGTATGTCTAGCTGGGGCAGTGGGGCTGGGTAGAGGTAACCTTGAAATCAGCCTGGGCCAGCTTTGAACAGTGCTTCTAAGGTCTCCAGAGACCAAAGC
CAGATTGTCATCCCCCACACCCTGGGTGGGCACAGGAGGGCTGAGCTTGTTCCTACCCACTGGCAGCTGCTGATTCAACTATGTCTCCTTTCCCTCTGTGGAGTACTTTTTTCCTGTTGTGTTGAATT
CTGGAGGAAGAGGCAGCCTTGACTGTGAGGAGCTGTGTTTCTCCAAGGTCCATCAGGTTATCTCCAGGAGCTGGCCAGTCACCTTAGAAAACAGCTGAATGGAATATTTTTATACCTGATGTTTACAG
ATGTTGGGAAGTTATCAATAAAGACTGTTGTTAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252922 ⟹ XP_006252984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,936,552 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,902,570 - 18,916,266 (+)	NCBI
Rnor_6.0	16	20,652,863 - 20,666,581 (+)	NCBI
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI

Sequence:

show sequence

GGTCCTGTGCCCCCCTCCCCACCCCCAGTCGCGGCCGCCGCGCCTCGGGAAACAGCTTCAGATGCGCAGCCCCGCCCCCGCGTGCCCATTGGCTGGTCACGCCGCGGCTGCCACGCTTATTGGCTTCT
GCACACGTCTGTCTCGCGCCCTGGACACCGCCTTTTTCCTGGCTTCAGGGGTTAAGGAGAAAGAGATGGACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACT
GATGACGTCAACGCCATAATTCTGGCCCAGAAGAACATGCTGGACCGCTTCGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGCGTGCGGCTGCAGCAGATGAGCGAGCGCTTCAT
GCACCACACCCGCACCTTGGTGGACATGAAACGGGACCTGGACAGCATCTTCCGCAGGATCAGGACACTGAAGGGGAAGCTGGCCCGGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCAC
TCCTAGAGGACGAAGATGAAGACCCTGTTCCACCCAGTATCACCACAACCATCGCCACCTCAGAGCAGAGCACAGGGTCCTGTGACACCAGCCCTGACACTGCCTCTCCATCCTTCAGTCCTGGCTTT
GAGGACCTATCACACATTCGACCTGGCTCTCCTGCCATCAATGGCCACAGCCAAACAGATGATGAGGAAGAAACACGTGAAGAATAACCTCTCTCCCAACCTCCCAGAAAGGCCCAGGGCAGCAGTGG
TTCTCCTAGGGTCACAGTCAGTCAGCTTTGCTGCTCCTTTCTTTTGTAGGCAGGGTTCCTAATTCCTGCCACTCCCCGTAAGAGCAGGACTTCCTATGCCAGCATGTATGTCTAGCTGGGGCAGTGGG
GCTGGGTAGAGGTAACCTTGAAATCAGCCTGGGCCAGCTTTGAACAGTGCTTCTAAGGTCTCCAGAGACCAAAGCCAGATTGTCATCCCCCACACCCTGGGTGGGCACAGGAGGGCTGAGCTTGTTCC
TACCCACTGGCAGCTGCTGATTCAACTATGTCTCCTTTCCCTCTGTGGAGTACTTTTTTCCTGTTGTGTTGAATTCTGGAGGAAGAGGCAGCCTTGACTGTGAGGAGCTGTGTTTCTCCAAGGTCCAT
CAGGTTATCTCCAGGAGCTGGCCAGTCACCTTAGAAAACAGCTGAATGGAATATTTTTATACCTGATGTTTACAGATGTTGGGAAGTTATCAATAAAGACTGTTGTTAAAAGGGAA

hide sequence

RefSeq Acc Id:

XM_006252923 ⟹ XP_006252985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,940,872 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,906,728 - 18,916,266 (+)	NCBI
Rnor_6.0	16	20,656,946 - 20,666,581 (+)	NCBI
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI

Sequence:

show sequence

ATTGGCCACTTCCGGATTGCTTATGAGCCATGATTGGAACATTGCGCATGCGCATATATCGCCCTGTGATTGGTCATCGTTTTGACGTTCATGTTAAGTGCTTCTACATTTTGGTCCTACATCTTCCT
TGCTGGGAGTACGCGCAGGCTCCTAGGCGCTTGGACAGAAGGAACACATGGACGCTCCGTGATGACGTACGCGCGCTGGCGCCATCCCGGAAGCGCCATCCTGGCCGCCAGATGTGCAGGTGCCGAGG
CCGGAGACGCCAGGGCCGGTTCGGGAGGGATCGCAAGGCGCCAGGAGGCCGGGGCGGGGAGGGAGGGCCCATCCTACCTCTGGTACCGACACAGTCTCAGTTTTCCCGGATGCTCAGCGGCAGCGCGG
GCCAATCTAGATGAGAACCCTAGTTGTGTGACCGTCCGCAAGCGGGACCCTTGAGCGGCTTGGAGTGCGCGCGTGCCTCATTTTCCCCGCTCGAAGGGGCGGGAACTCCATGCTTCAGGGGTTAAGGA
GAAAGAGATGGACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTGATGACGTCAACGCCATAATTCTGGCCCAGAAGAACATGCTGGACCGCTTCGAGAAAA
CCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGCGTGCGGCTGCAGCAGATGAGCGAGCGCTTCATGCACCACACCCGCACCTTGGTGGACATGAAACGGGACCTGGACAGCATCTTCCGCAGG
ATCAGGACACTGAAGGGGAAGCTGGCCCGGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCACTCCTAGAGGACGAAGATGAAGACCCTGTTCCACCCAGTATCACCACAACCATCGCCAC
CTCAGAGCAGAGCACAGGGTCCTGTGACACCAGCCCTGACACTGCCTCTCCATCCTTCAGTCCTGGCTTTGAGGACCTATCACACATTCGACCTGGCTCTCCTGCCATCAATGGCCACAGCCAAACAG
ATGATGAGGAAGAAACACGTGAAGAATAACCTCTCTCCCAACCTCCCAGAAAGGCCCAGGGCAGCAGTGGTTCTCCTAGGGTCACAGTCAGTCAGCTTTGCTGCTCCTTTCTTTTGTAGGCAGGGTTC
CTAATTCCTGCCACTCCCCGTAAGAGCAGGACTTCCTATGCCAGCATGTATGTCTAGCTGGGGCAGTGGGGCTGGGTAGAGGTAACCTTGAAATCAGCCTGGGCCAGCTTTGAACAGTGCTTCTAAGG
TCTCCAGAGACCAAAGCCAGATTGTCATCCCCCACACCCTGGGTGGGCACAGGAGGGCTGAGCTTGTTCCTACCCACTGGCAGCTGCTGATTCAACTATGTCTCCTTTCCCTCTGTGGAGTACTTTTT
TCCTGTTGTGTTGAATTCTGGAGGAAGAGGCAGCCTTGACTGTGAGGAGCTGTGTTTCTCCAAGGTCCATCAGGTTATCTCCAGGAGCTGGCCAGTCACCTTAGAAAACAGCTGAATGGAATATTTTT
ATACCTGATGTTTACAGATGTTGGGAAGTTATCAATAAAGACTGTTGTTAAAAGGGAA

hide sequence

RefSeq Acc Id:

XM_006252924 ⟹ XP_006252986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,941,105 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,906,862 - 18,916,266 (+)	NCBI
Rnor_6.0	16	20,657,189 - 20,666,581 (+)	NCBI
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI

Sequence:

show sequence

GCAGGTGCCGAGGCCGGAGACGCCAGGGCCGGTTCGGGAGGGATCGCAAGGCGCCAGGAGGCCG
GGGCGGGGAGGGAGGGCCCATCCTACCTCTGGTACCGACACAGTCTCAGTTTTCCCGGATGCTCAGCGGCAGCGCGGGCCAATCTAGATGAGAACCCTAGTTGTGTGACCGTCCGCAAGCGGGACCCT
TGAGCGGCTTGGAGTGCGCGCGTGCCTCATTTTCCCCGCTCGAAGGGGCGGGAACTCCATGTATGTTTGAACCCCGCCTTATTCGGTTTGGTTCTTGTTGTTGATTCCCCTTCGGAGTTTGGCCGTGG
AGTTGAAGTCGGTTTGAGGACTCGGGCGGGACAGATGTGTGCTCCTACTTGTAACCTTGAGACGCAGAGCCATTCCAGTCAGCCTGGCATTCTTGGGGGAGAGTTAGTGTTTTTTTCAGGCTTCAGGG
GTTAAGGAGAAAGAGATGGACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAGCATGGTGAACACTGATGACGTCAACGCCATAATTCTGGCCCAGAAGAACATGCTGGACCGCTT
CGAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGCGTGCGGCTGCAGCAGATGAGCGAGCGCTTCATGCACCACACCCGCACCTTGGTGGACATGAAACGGGACCTGGACAGCATCT
TCCGCAGGATCAGGACACTGAAGGGGAAGCTGGCCCGGCAGCACCCAGAGGCCTTCAGCCACATCCCAGAGGGTTCACTCCTAGAGGACGAAGATGAAGACCCTGTTCCACCCAGTATCACCACAACC
ATCGCCACCTCAGAGCAGAGCACAGGGTCCTGTGACACCAGCCCTGACACTGCCTCTCCATCCTTCAGTCCTGGCTTTGAGGACCTATCACACATTCGACCTGGCTCTCCTGCCATCAATGGCCACAG
CCAAACAGATGATGAGGAAGAAACACGTGAAGAATAACCTCTCTCCCAACCTCCCAGAAAGGCCCAGGGCAGCAGTGGTTCTCCTAGGGTCACAGTCAGTCAGCTTTGCTGCTCCTTTCTTTTGTAGG
CAGGGTTCCTAATTCCTGCCACTCCCCGTAAGAGCAGGACTTCCTATGCCAGCATGTATGTCTAGCTGGGGCAGTGGGGCTGGGTAGAGGTAACCTTGAAATCAGCCTGGGCCAGCTTTGAACAGTGC
TTCTAAGGTCTCCAGAGACCAAAGCCAGATTGTCATCCCCCACACCCTGGGTGGGCACAGGAGGGCTGAGCTTGTTCCTACCCACTGGCAGCTGCTGATTCAACTATGTCTCCTTTCCCTCTGTGGAG
TACTTTTTTCCTGTTGTGTTGAATTCTGGAGGAAGAGGCAGCCTTGACTGTGAGGAGCTGTGTTTCTCCAAGGTCCATCAGGTTATCTCCAGGAGCTGGCCAGTCACCTTAGAAAACAGCTGAATGGA
ATATTTTTATACCTGATGTTTACAGATGTTGGGAAGTTATCAATAAAGACTGTTGTTAAAAGGGAA

hide sequence

RefSeq Acc Id:

XM_039094763 ⟹ XP_038950691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,941,316 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,907,346 - 18,916,266 (+)	NCBI

RefSeq Acc Id:

XM_039094764 ⟹ XP_038950692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,936,552 - 18,946,866 (+)	NCBI
mRatBN7.2	16	18,902,570 - 18,912,893 (+)	NCBI

RefSeq Acc Id:

XM_039094765 ⟹ XP_038950693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,929,316 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,895,343 - 18,916,266 (+)	NCBI

RefSeq Acc Id:

XM_039094767 ⟹ XP_038950695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,936,552 - 18,950,239 (+)	NCBI
mRatBN7.2	16	18,902,570 - 18,916,266 (+)	NCBI

RefSeq Acc Id:

XM_063275639 ⟹ XP_063131709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,941,104 - 18,950,239 (+)	NCBI

RefSeq Acc Id:

XM_063275640 ⟹ XP_063131710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,940,336 - 18,946,866 (+)	NCBI

RefSeq Acc Id:

XM_063275641 ⟹ XP_063131711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,936,552 - 18,947,288 (+)	NCBI


Protein RefSeqs	NP_001020314	(Get FASTA)	NCBI Sequence Viewer
	XP_006252984	(Get FASTA)	NCBI Sequence Viewer
	XP_006252985	(Get FASTA)	NCBI Sequence Viewer
	XP_006252986	(Get FASTA)	NCBI Sequence Viewer
	XP_038950691	(Get FASTA)	NCBI Sequence Viewer
	XP_038950692	(Get FASTA)	NCBI Sequence Viewer
	XP_038950693	(Get FASTA)	NCBI Sequence Viewer
	XP_038950695	(Get FASTA)	NCBI Sequence Viewer
	XP_063131709	(Get FASTA)	NCBI Sequence Viewer
	XP_063131710	(Get FASTA)	NCBI Sequence Viewer
	XP_063131711	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88216	(Get FASTA)	NCBI Sequence Viewer
	EDL90698	(Get FASTA)	NCBI Sequence Viewer
	EDL90699	(Get FASTA)	NCBI Sequence Viewer
	EDL90700	(Get FASTA)	NCBI Sequence Viewer
	EDL90701	(Get FASTA)	NCBI Sequence Viewer
	EDL90702	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027053
	ENSRNOP00000079541
	ENSRNOP00000093549
GenBank Protein	Q5M853	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020314 ⟸ NM_001025143
- UniProtKB:	Q5M853 (UniProtKB/Swiss-Prot), A6KA37 (UniProtKB/TrEMBL), A0A8L2QER4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSLLEDEDEDPVPPSITTTIATSE QSTGSCDTSPDTASPSFSPGFEDLSHIRPGSPAINGHSQTDDEEETREE hide sequence

RefSeq Acc Id:	XP_006252984 ⟸ XM_006252922
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALL5 (UniProtKB/TrEMBL), A0A8L2QER4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSPAPACPLAGHAAAATLIGFCTRLSRALDTAFFLASGVKEKEMDTPDSASRVFCGRFLSMVN TDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSLLEDEDEDPVPPSITTTIATSEQSTGSCDTSPDTASPSFSPG FEDLSHIRPGSPAINGHSQTDDEEETREE hide sequence

RefSeq Acc Id:	XP_006252985 ⟸ XM_006252923
- Peptide Label:	isoform X5
- UniProtKB:	Q5M853 (UniProtKB/Swiss-Prot), A6KA37 (UniProtKB/TrEMBL), A0A8L2QER4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFM HHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSLLEDEDEDPVPPSITTTIATSEQSTGSCDTSPDTASPSFSPGFEDLSHIRPGSPAINGHSQTDDEEETREE hide sequence

RefSeq Acc Id:	XP_006252986 ⟸ XM_006252924
- Peptide Label:	isoform X5
- UniProtKB:	Q5M853 (UniProtKB/Swiss-Prot), A6KA37 (UniProtKB/TrEMBL), A0A8L2QER4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFMHHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSLLEDEDEDPVPPSITTTIATSE QSTGSCDTSPDTASPSFSPGFEDLSHIRPGSPAINGHSQTDDEEETREE hide sequence

Ensembl Acc Id:

ENSRNOP00000027053 ⟸ ENSRNOT00000027053

Protein Domains

KxDL Ubiquitin-like

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M853-F1-model_v2	AlphaFold	Q5M853	1-177	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700027

Promoter ID:

EPDNEW_R10550

Type:

initiation region

Name:

Kxd1_1

Description:

KxDL motif containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	20,657,157 - 20,657,217	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-11786	BioCyc
Ensembl Genes	ENSRNOG00000019971	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000027053	ENTREZGENE
	ENSRNOT00000097213	ENTREZGENE
	ENSRNOT00000108401	ENTREZGENE
IMAGE_CLONE	IMAGE:7383995	IMAGE-MGC_LOAD
InterPro	KXD1-like	UniProtKB/Swiss-Prot
	Uncharacterised_KxDL	UniProtKB/Swiss-Prot
KEGG Report	rno:498606	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108940	IMAGE-MGC_LOAD
NCBI Gene	498606	ENTREZGENE
PANTHER	KXDL MOTIF-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR13511	UniProtKB/Swiss-Prot
Pfam	KxDL	UniProtKB/Swiss-Prot
PhenoGen	Kxd1	PhenoGen
RatGTEx	ENSRNOG00000019971	RatGTEx
UniProt	A0A8I5ZZ63_RAT	UniProtKB/TrEMBL
	A0A8I6ALL5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G5G7_RAT	UniProtKB/TrEMBL
	A0A8L2QER4	ENTREZGENE, UniProtKB/TrEMBL
	A6KA37	ENTREZGENE, UniProtKB/TrEMBL
	KXDL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-09-18	Kxd1	KxDL motif containing 1	LOC498606	hypothetical protein LOC498606	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498606	hypothetical protein LOC498606			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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