Kxd1 (KxDL motif containing 1) - Rat Genome Database

Name: Kxd1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Kxd1 (KxDL motif containing 1) Mus musculus

Analyze

Symbol:

Kxd1

Name:

KxDL motif containing 1

RGD ID:

1622240

MGI Page

MGI

Description:

Involved in vesicle-mediated transport. Colocalizes with BLOC-1 complex. Used to study Hermansky-Pudlak syndrome. Orthologous to human KXD1 (KxDL motif containing 1); INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; tetrachloromethane; benzo[a]pyrene (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

0610030B01Rik; 2810422J05Rik; C78305; hypothetical protein LOC75620; kxDL motif-containing protein 1; UPF0459 protein C19orf50 homolog

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KXD1 (KxDL motif containing 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, Panther, Treefam
Rattus norvegicus (Norway rat):	Kxd1 (KxDL motif containing 1)	HGNC	Treefam, EggNOG, NCBI, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	KXD1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kxd1 (KxDL motif containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1)	HGNC	OrthoMCL
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Kxd1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Homo sapiens (human):	KXD1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)
Danio rerio (zebrafish):	kxd1 (KxDL motif containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	CG10681	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	kxd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,966,046 - 70,975,830 (-)	NCBI	GRCm39		mm39
GRCm38	8	70,513,396 - 70,523,180 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,508,272 - 70,527,956 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,037,295 - 73,047,079 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,442,375 - 73,452,456 (-)	NCBI			mm8
Celera	8	73,069,814 - 73,079,598 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hermansky-Pudlak syndrome (IEA)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

finasteride (ISO)

flutamide (ISO)

nefazodone (ISO)

nimesulide (ISO)

tetrachloromethane (EXP)

valdecoxib (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lysosome localization (IBA,ISO)

vesicle-mediated transport (IMP)

Cellular Component

BLOC-1 complex (IBA,IDA)

BORC complex (IBA,ISO)

lysosome (IEA)

membrane (IEA)

Molecular Function

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal choroid melanin granule morphology (IAGP)

abnormal retinal melanin granule morphology (IAGP)

decreased platelet dense granule number (IAGP)

References

References - curated


1.	RGD automated import pipeline
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073
PMID:17967808	PMID:18590716	PMID:18799693	PMID:21873635	PMID:22554196	PMID:27719760

Genomics

Comparative Map Data

Kxd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,966,046 - 70,975,830 (-)	NCBI	GRCm39		mm39
GRCm38	8	70,513,396 - 70,523,180 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,508,272 - 70,527,956 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,037,295 - 73,047,079 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,442,375 - 73,452,456 (-)	NCBI			mm8
Celera	8	73,069,814 - 73,079,598 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

KXD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	18,557,762 - 18,569,387 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	18,557,762 - 18,569,381 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	18,668,572 - 18,680,197 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	18,529,604 - 18,541,188 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	18,570,781 - 18,582,406 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,231,216 - 18,242,793 (+)	NCBI		HuRef
CHM1_1	19	18,668,755 - 18,680,395 (+)	NCBI		CHM1_1

Kxd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	20,652,863 - 20,666,581 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,657,099 - 20,666,579 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,508,327 - 20,522,060 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,413,529 - 19,423,011 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	16	19,098,221 - 19,107,703 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Kxd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	3,006,147 - 3,018,772 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	3,010,997 - 3,018,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

KXD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	19,005,136 - 19,016,552 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	19	18,034,887 - 18,046,603 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

KXD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	44,481,557 - 44,489,188 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	44,480,634 - 44,489,287 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Kxd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	2,711,326 - 2,719,839 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KXD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	59,242,301 - 59,250,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,051,909 - 59,060,504 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KXD1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	6	17,028,819 - 17,037,867 (+)	Ensembl
ChlSab1.1	6	17,028,785 - 17,037,871 (+)	NCBI

Kxd1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	1,737,166 - 1,744,918 (+)	NCBI

Position Markers

BB157005

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	70,514,579 - 70,514,682	UniSTS	GRCm38
MGSCv37	8	73,038,478 - 73,038,581	UniSTS	GRCm37
Celera	8	73,070,997 - 73,071,100	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	743.1	UniSTS

RH126344

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	70,513,406 - 70,513,604	UniSTS	GRCm38
MGSCv37	8	73,037,305 - 73,037,503	UniSTS	GRCm37
Celera	8	73,069,824 - 73,070,022	UniSTS
Cytogenetic Map	8	B3.3	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1645
Count of miRNA genes:	619
Interacting mature miRNAs:	733
Transcripts:	ENSMUST00000093456, ENSMUST00000117580, ENSMUST00000118850, ENSMUST00000121623, ENSMUST00000132867, ENSMUST00000137610, ENSMUST00000138260, ENSMUST00000138586, ENSMUST00000155677
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_029366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC157774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK002695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK155003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC053944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK620747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000093456 ⟹ ENSMUSP00000091165

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,513,396 - 70,523,180 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000117580 ⟹ ENSMUSP00000112561

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,514,690 - 70,527,956 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000118850 ⟹ ENSMUSP00000113816

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,513,604 - 70,523,279 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000121623 ⟹ ENSMUSP00000113804

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,508,272 - 70,523,163 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000132867 ⟹ ENSMUSP00000123679

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,518,411 - 70,527,783 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000137610 ⟹ ENSMUSP00000121539

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,515,395 - 70,523,090 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138260 ⟹ ENSMUSP00000123438

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,508,450 - 70,527,956 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138586

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,519,071 - 70,523,104 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000155677 ⟹ ENSMUSP00000123548

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,514,127 - 70,523,180 (-)	Ensembl

RefSeq Acc Id:

NM_029366 ⟹ NP_083642

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,966,046 - 70,975,830 (-)	NCBI
GRCm38	8	70,513,396 - 70,523,180 (-)	ENTREZGENE
MGSCv37	8	73,037,295 - 73,047,079 (-)	RGD
Celera	8	73,069,814 - 73,079,598 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GCGGTGAGTACGCGCAGGCTCCTAGGCGCCAGGACAGGGGGCGCTCGTGGACGCTCTATGATGA
CGTAAGCGCTAGGGCGCCCTCCCGGAAGCGCGAGCCAGGCCGCCAGATGTGCAGGCATTGGAGG
CGGAGGAGAAAGAGATGGACACCCCAGACTCAGCCTCAAGGGTCTTCTGTGGCCGCTTCCTCAG
CATGGTGAACACTGATGATGTCAATGCCATAATCCTGGCCCAGAAGAATATGCTGGACCGCTTC
GAGAAAACCAACGAGATGCTTCTGAACTTCAACAATCTGTCCAGTGTGCGGCTGCAACAGATGA
GTGAGCGCTTCATGCACCATACCCGCACCTTGGTGGACATGAAACGGGATCTGGACAGCATTTT
CCGAAGGATCAGGACACTGAAGGGGAAGCTAGCCCGGCAGCACCCAGAGGCCTTCAGCCACATC
CCAGAGGGTTCATTCCTAGAGGATGAAGATGAAGACCCTATCCCACCCAGTATCACCACAACCA
TCGCCACCTCGGAGCAGAGCACGGGCTCCTGTGACACCAGCCCTGACACGGTCTCGCCATCCCT
AAGTCCTGGCTTTGAGGACCTATCACACATTCAACCTGGCTCTCCTGCCATCAACGGCCACAGA
CAGACAGATGATGAGGAAGAGACACATGAAGAATAGCCTCCCTCCCACCATCCCAGAAAGGCTC
AGGGCAGCCGTGATCCTCCTAGGGTCACAGTCGGTCAGCTTGGCTGCTCCATTCTTTCATAGGC
AGGATTCCTAATTCCTGCCACTCCCCCTAAGAGCAGGACTTCCCTATGCCAGCACATGTGCCCC
AGGTGGGGCTGAGTACAGGTAACCTTGAGCTCAGCTTGGGCCAGCTTTGAACAGTGCTTCTGAG
GTCCCCAGAGACCAAAGCCAGATCGTCTGTCCCCCACACCTTAGGTGGGCACAGGAGGGCCGAG
CTTGTTTCTACCCACTGGCAGCTGCTGACTCAACTCTGGGCTCCCTGCCATCTGTGGAGTACTT
TTTTCCTGTTGTGTTGAATACTGGAGAAATAGAAGGTTCAAGATAGAGGCAGACCTGACTGTTT
CTTGAGGGTCCATCAGGCATCTCCAGGAGCTGGCCAGTTATCTTAGAAAACAACTGAATGGAAT
ATTTTTGTACCTGATGTTTCCAGATGTTGGGAAGTTATCAATAAAGACTGTTGTTAAAAGGGAA
AAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_083642	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH48938	(Get FASTA)	NCBI Sequence Viewer
	Q80XH1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_083642 ⟸ NM_029366
- UniProtKB:	Q80XH1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDTPDSASRVFCGRFLSMVNTDDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSVRLQQMSERFM HHTRTLVDMKRDLDSIFRRIRTLKGKLARQHPEAFSHIPEGSFLEDEDEDPIPPSITTTIATSE QSTGSCDTSPDTVSPSLSPGFEDLSHIQPGSPAINGHRQTDDEEETHEE hide sequence

RefSeq Acc Id:

ENSMUSP00000123438 ⟸ ENSMUST00000138260

RefSeq Acc Id:

ENSMUSP00000113816 ⟸ ENSMUST00000118850

RefSeq Acc Id:

ENSMUSP00000123679 ⟸ ENSMUST00000132867

RefSeq Acc Id:

ENSMUSP00000091165 ⟸ ENSMUST00000093456

RefSeq Acc Id:

ENSMUSP00000121539 ⟸ ENSMUST00000137610

RefSeq Acc Id:

ENSMUSP00000112561 ⟸ ENSMUST00000117580

RefSeq Acc Id:

ENSMUSP00000123548 ⟸ ENSMUST00000155677

RefSeq Acc Id:

ENSMUSP00000113804 ⟸ ENSMUST00000121623

Protein Domains

KxDL Ubiquitin-like

Promoters

RGD ID:

8667319

Promoter ID:

EPDNEW_M11690

Type:

multiple initiation site

Name:

Kxd1_1

Description:

Mus musculus KxDL motif containing 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,523,098 - 70,523,158	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1922870	AgrOrtholog
Ensembl Genes	ENSMUSG00000055553	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000091165	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000112561	UniProtKB/TrEMBL
	ENSMUSP00000113804	UniProtKB/TrEMBL
	ENSMUSP00000113816	UniProtKB/TrEMBL
	ENSMUSP00000121539	UniProtKB/TrEMBL
	ENSMUSP00000123438	UniProtKB/TrEMBL
	ENSMUSP00000123548	UniProtKB/TrEMBL
	ENSMUSP00000123679	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000093456	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000117580	UniProtKB/TrEMBL
	ENSMUST00000118850	UniProtKB/TrEMBL
	ENSMUST00000121623	UniProtKB/TrEMBL
	ENSMUST00000132867	UniProtKB/TrEMBL
	ENSMUST00000137610	UniProtKB/TrEMBL
	ENSMUST00000138260	UniProtKB/TrEMBL
	ENSMUST00000155677	UniProtKB/TrEMBL
Gene3D-CATH	2.20.28.70	UniProtKB/TrEMBL
InterPro	KXD1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	L40e_sf	UniProtKB/TrEMBL
	Ribosomal_L40e	UniProtKB/TrEMBL
	Ribosomal_zn-bd	UniProtKB/TrEMBL
	Ubiquitin	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
	Ubiquitin_CS	UniProtKB/TrEMBL
	Ubiquitin_subgr	UniProtKB/TrEMBL
	Uncharacterised_KxDL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:75620	UniProtKB/Swiss-Prot
MGD	MGI:1922870	ENTREZGENE
NCBI Gene	75620	ENTREZGENE
PANTHER	PTHR13511	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	KxDL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L40e	UniProtKB/TrEMBL
	ubiquitin	UniProtKB/TrEMBL
PhenoGen	Kxd1	PhenoGen
PRINTS	UBIQUITIN	UniProtKB/TrEMBL
PROSITE	UBIQUITIN_1	UniProtKB/TrEMBL
	UBIQUITIN_2	UniProtKB/TrEMBL
SMART	Ribosomal_L40e	UniProtKB/TrEMBL
	UBQ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
	SSF57829	UniProtKB/TrEMBL
UniGene	Mm.482129	ENTREZGENE
UniProt	D3YWA5_MOUSE	UniProtKB/TrEMBL
	D3YXX6_MOUSE	UniProtKB/TrEMBL
	D3Z2M8_MOUSE	UniProtKB/TrEMBL
	E9Q4P0_MOUSE	UniProtKB/TrEMBL
	E9QNP0_MOUSE	UniProtKB/TrEMBL
	G3X9Z9_MOUSE	UniProtKB/TrEMBL
	KXDL1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-20	Kxd1	KxDL motif containing 1	2810422J05Rik	RIKEN cDNA 2810422J05 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - MGI